Return to main results Retrieve Phyre Job Id

Job DescriptionP39838
Confidence99.25%DateThu Jan 5 12:01:06 GMT 2012
Rank110Aligned Residues98
% Identity13%Templatec2rdmB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
Resolution1.76 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   692.......700.........710.........720......... 730.........740... .. ...
Predicted Secondary structure 













.......









.

...............
Query SS confidence 





































. . . . . . .













.

. . . . . . . . . . . . . . .


Query Sequence  DDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLIS. . . . . . . QDYDIFLTDNPSNL. TA. . . . . . . . . . . . . . . SGL
Query Conservation       
   
           
   
     
      .......   
 

 
  
  .  ............... 
 
Alig confidence 





































.......













.

...............


Template Conservation 
   





       
   
   
  
  
    

   
      



 
  
     
  
   
        

Template Sequence  EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNXPIV
Template Known Secondary structure 



S
TT
SSTT



S

SSSS

TT

Template Predicted Secondary structure 



























Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   749750.........760.........770..... ....780.........790.
Predicted Secondary structure 












.




Query SS confidence 


























.















Query Sequence  LLSDDESGVREIGPGQLCVNFNMSNAM. QEAVLQLIEVQLAQEE
Query Conservation    

                    
  .                
Alig confidence 












..











.















Template Conservation    
          ..       
 

     
   
   
  
 
Template Sequence  YISGHAALEWASN. . GVPDSIILEKPFTSAQLITAVSQLLNARE
Template Known Secondary structure  SS
STT..S
TT
SS

TT
Template Predicted Secondary structure 



..











Template SS confidence 











































   82.......90.... .....100.........110.........120...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions