Job Description P39838 Confidence 53.15% Date Thu Jan 5 12:01:06 GMT 2012 Rank 257 Aligned Residues 254 % Identity 9% Template c2p7jA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative sensory box/ggdef family protein; PDBTitle: crystal structure of the domain of putative sensory box/ggdef family2 protein from vibrio parahaemolyticus Resolution 2.25 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	A	W	L	K	D	K	S	Y	Q	I	V	D	I	T	H	A	I	Q	K	R	V	D	N	W	R	Y	V	T	W	Q	I	Y	D	N	I	A	A	T	T	S	P	S	S	G	E	G	L	Q	E	T	R	L	K	Q	D	V	Y	Y	L	E	K	P	R	R	K	T	E	A	L	I	F	G	S	H	D	N	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	N	T	A	K	E	A	L	H	Q	L	A	Y	T	G	R	E	Y	N	N	I	Q	D	Q	I	E	T	I	S	D	L	L	G	H	S	Q	S	L	Y	D	Y	L	R	E	P	S	K	A	N	L	T	I	L	E	N	X	W	S	S	V	A	R	N	Q	K	L	Y	K	Q	I	R	F	L	D	T	S	G	T	E
Template Known Secondary structure																																				T										S																															T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		122	.	.	.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																																						.	.
Query SS confidence															.	.	.	.	.	.	.																																						.	.
Query Sequence		L	E	M	T	Q	R	M	S	T	Y	L	D	T	.	.	.	.	.	.	.	L	W	G	A	E	N	V	P	W	S	M	Y	Y	L	N	G	Q	D	N	S	L	V	L	I	S	T	L	P	L	K	D	L	T	S	G	F	K	.	.	E	S	T	V	S	D	I	V	D	S	R	R	A	E	M	L	Q	Q	A	N	A
Query Conservation															.	.	.	.	.	.	.																																						.	.
Alig confidence															.	.	.	.	.	.	.																																						.	.
Template Conservation
Template Sequence		K	V	R	I	K	Y	D	F	K	T	S	I	A	G	P	S	L	I	L	R	D	K	S	A	R	E	Y	F	K	Y	A	Q	S	L	D	N	E	Q	I	S	A	W	G	I	E	L	E	R	D	K	G	E	L	V	Y	P	L	S	P	S	L	R	I	L	X	P	I	S	V	N	D	V	R	Q	G	Y	L	V	L	N
Template Known Secondary structure									T	T	T	T										B		T	T	S								T	S		T	T													T	T				S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	E	R	E	S	F	S	N	M	R	R	L	A	W	Q	N	G	H	Y	F	T	L	R	T	T	F	N	Q	P	G	H	L	A	T	V	V	A	F	D	L	P	I	N	D	L	I	P	P	G	M	P	L	D	S	F	R	L	E	P	D	A	T	A	T	G	N	N	D	N	E	K	E	G	T	D	S	V	S	I
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.
Template Sequence		V	D	I	E	Y	L	S	S	L	L	N	Y	S	P	V	R	D	F	H	I	E	L	V	K	H	.	.	.	.	.	.	.	.	K	G	F	Y	I	A	S	P	D	E	S	R	L	Y	G	D	I	I	P	E	R	S	Q	F	N	F	S	N	X	Y	P	D	I	W	P	R	V	V	S	E	Q	A	G	Y	S	Y	S
Template Known Secondary structure												S			T	T	T	T								T	.	.	.	.	.	.	.	.	T	S	B					S		G	G	G	B	T	T	T	T	S	T	T		T	T		B						T	T	T						T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.									.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	N	S	T	K	I	E	I	S	S	A	L	N	S	T	D	M	R	L	V	W	Q	V	P	Y	G	T	L	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	H	L	I	A	F	S	S	I	K	F	V	S	N	E	P	L	H	L	I	I	D	L	S	N	E	Q	L	S	K
Template Known Secondary structure		S	S											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions