Job Description P39838 Confidence 93.78% Date Thu Jan 5 12:01:06 GMT 2012 Rank 214 Aligned Residues 86 % Identity 12% Template c2gj3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:nitrogen fixation regulatory protein; PDBTitle: crystal structure of the fad-containing pas domain of the2 protein nifl from azotobacter vinelandii. Resolution 1.04 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400											.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		R	A	I	N	E	E	I	V	S	L	L	P	L	G	L	L	V	H	D	Q	E	S	N	R	T	V	I	S	N	K	I	A	D	H	L	L	P	H	L	N	L	Q	N	I	T	T	M	.	.	.	.	.	.	.	.	.	.	A	E	Q	H	Q	G	I	I	Q	A	T	I	N	N	E	L	Y	E	I	R	.	.	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence																							.																										.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																							.
Template Sequence		P	E	I	F	R	Q	T	V	E	H	A	P	I	A	I	S	I	T	D	L	K	.	A	N	I	L	Y	A	N	R	A	F	R	T	I	T	G	Y	G	S	E	E	V	L	G	K	N	E	S	I	L	S	N	G	T	T	P	R	L	V	Y	Q	A	L	W	G	R	L	A	Q	K	K	P	W	S	G	V	L	V	N
Template Known Secondary structure													S	S							T	T	.		B																T	T	G	G	G	G		B	G	G	G	G			T	T	S														T	T
Template Predicted Secondary structure																							.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
																		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	R	S	Q	V	A	P	R	T	Q	I	F	I	I	R	D	Q	D	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	K	D	K	T	L	Y	L	A	E	L	T	V	A	P	V	L	N	E	A	G	E	T	I	Y	Y	L	G	M	H	R	D	T	S	E
Template Known Secondary structure				T	T	S															T	T	S														S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions