Job Description P39838 Confidence 100.00% Date Thu Jan 5 12:01:06 GMT 2012 Rank 5 Aligned Residues 235 % Identity 14% Template c1y8oA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; PDBTitle: crystal structure of the pdk3-l2 complex Resolution 2.48 Å

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		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.																	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	E	V	L	V	N	K	K	L	K	Q	A	Q	R	L	Y	E	K	N	Q	Q	G	R	M	I	F	M	K	N	I	G	D	A	L	K	E	P	A	Q	S	L	A	E	S	A	A	K	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	E	S	K	Q	L	A	N	Q	A	D	V	L
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	W	Y	M	Q	S	F	L	E	L	L	E	Y	E	N	K	S	P	E	D	P	Q	V	L	D	N	F	L	Q	V	L	I	K	V	R	N	R	H	N	D	V	V	P	T	M	A	Q	G	V	I	E	Y	K	E	K	F	G	F	D	P	F	I	S	T	N	I	Q	Y	F	L	D	R	F	Y	T	N	R	I	S	F
Template Known Secondary structure													G	G	G	G			T	T																			G	G	G
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.						.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.								.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																									.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		V	R	L	V	D	E	I	Q	L	A	N	M	L	A	D	D	S	W	K	S	E	T	V	.	.	.	.	.	L	F	S	V	Q	D	L	I	D	E	V	V	P	S	V	L	P	A	I	K	R	K	.	.	.	.	.	.	.	G	L	Q	L	L	I	N	N	H	L	K	A	H	D	M	R	R	G	D	R	D	A	L
Query Conservation																									.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	M	L	I	N	Q	H	T	L	L	F	G	G	D	T	N	P	V	H	P	K	H	I	G	S	I	D	P	T	C	N	V	A	D	V	V	K	D	A	Y	E	T	A	K	M	L	C	E	Q	Y	Y	L	V	A	P	E	L	E	V	E	E	F	N	A	K	A	P	D	K	P	I	Q	V	V	Y	V	P	S	H	L
Template Known Secondary structure													S			S	S		S	S	T	T	S	B	T	T	B																										S												T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		571	.	.	.	.	.	.	.	.	580	.	.	.	.	.										.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		R	R	I	L	L	L	L	M	Q	Y	A	V	T	S	T	.	.	.	.	.	.	.	.	.	Q	L	G	K	I	T	L	E	V	D	Q	D	E	S	S	E	D	R	L	T	F	R	I	L	D	T	G	E	G	V	S	I	H	E	M	D	N	L	H	F	P	F	I	N	Q	T	Q	N	D	R	Y	G	K	A	D	P
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.													.	.	.																															.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.																															.	.	.	.	.	.	.	.
Template Sequence		F	H	M	L	F	E	L	F	K	N	S	M	R	A	T	V	E	L	Y	E	D	R	K	E	G	Y	P	A	V	K	T	L	V	T	L	G	.	.	.	K	E	D	L	S	I	K	I	S	D	L	G	G	G	V	P	L	R	K	I	D	R	L	F	N	Y	M	Y	S	P	.	.	.	.	.	.	.	.	L	F	G
Template Known Secondary structure																					T	T		S	S													.	.	.	S	S										S									G	G	G	G		T	T	T			.	.	.	.	.	.	.	.			T
Template Predicted Secondary structure																																						.	.	.																															.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.									.	.	310
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	F	W	L	S	D	Q	L	A	R	K	L	G	G	H	L	N	I	K	T	R	D	G	L	G	T	R	Y	S	V	H	I	K	M	L	A	A	D	P	E	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	L	P	I	S	R	L	Y	A	R	Y	F	Q	G	D	L	K	L	Y	S	M	E	G	V	G	T	D	A	V	I	Y	L	K	A	L	S	S	E	S	F	E	R
Template Known Secondary structure		T												T	T									T	T	T										S		G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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