Job Description P39838 Confidence 98.71% Date Thu Jan 5 12:01:06 GMT 2012 Rank 159 Aligned Residues 154 % Identity 13% Template c1rnlA_ PDB info PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl Resolution 2.40 Å

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		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.			.	.	720	.	.	.	.	.	.	.	.	.							730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.																.	.	.
Predicted Secondary structure																												.	.													.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.													.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	V	C	V	M	V	D	V	T	S	A	E	I	R	N	I	V	T	R	Q	L	E	N	W	G	.	.	A	T	C	I	T	P	D	E	R	L	I	S	.	.	.	.	.	.	Q	D	Y	D	I	F	L	T	D	N	P	S	N	L	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	L
Query Conservation																												.	.													.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.													.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	P	A	T	I	L	L	I	D	D	H	P	M	L	R	T	G	V	K	Q	L	I	S	M	A	P	D	I	T	V	V	G	E	A	S	N	G	E	Q	G	I	E	L	A	E	S	L	D	P	D	L	I	L	L	D	L	N	M	P	G	M	N	G	L	E	T	L	D	K	L	R	E	K	S	L	S	G	R	I	V
Template Known Secondary structure											S														T		T	T								S	S														S						T	T		G	G	G										T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.						.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																																									.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.																																									.	.	.	.	.	.	.	.
Query Sequence		L	L	S	D	D	E	S	G	V	R	E	I	G	P	G	Q	L	C	V	N	F	N	M	S	N	A	M	.	.	.	.	.	Q	E	A	V	L	Q	L	I	E	V	Q	L	A	Q	E	E	V	T	E	S	P	L	G	G	D	E	N	A	Q	L	H	A	S	G	Y	Y	A	L	F	V	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.																																									.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	S	V	S	N	H	E	E	D	V	V	T	A	L	K	R	G	A	D	G	Y	L	L	K	D	M	E	P	E	D	L	L	K	A	L	H	Q	A	A	A	G	E	M	V	L	S	E	A	L	T	P	V	L	A	A	S	L	Q	L	T	P	R	E	R	D	I	L	K	L	I	A	Q	G	L	P	N	K	M	I
Template Known Secondary structure					S		S											T	T		S					T	T	S															S						T	T	T																							T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
										816	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	D	T	V	P	D	D	V	K	R	L	Y	T	E	A	A	T	S	D	F	A	A	L	A	Q	T	A	H	R	L	K
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	R	L	D	I	T	E	S	T	V	K	V	H	V	K	H	M	L	K	K	M	K	L	K	S	R	V	E	A	A	V	W	V	H	Q	E	R
Template Known Secondary structure						T																	T	T			S												T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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