Job Description P77013 Confidence 0.92% Date Thu Jan 5 12:25:25 GMT 2012 Rank 50 Aligned Residues 145 % Identity 11% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	K	R	G	H	S	I	N	T	G	K	V	L	R	G	.	A	P	W	Q	I	V	I	F	S	L	G	M	Y	I	V	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	R	N	A	G	F	T	E	Y	L	S	G	V	L	N	L	L	A	D	K	G	L	W	A	A	T	F	G	T	G
Query Conservation																		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L
Template Known Secondary structure					T		S	S																																			T	T	S								G	G	G												T	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	T	A	F	L	S	S	V	M	N	N	M	P	T	V	L	I	G	A	L	S	I	D	G	S	T	A	T	G	V	V	K	E	A	M	I	Y	A	N	V	I	G	C	D	L	G	P	K	I	T	P	I	G	S	L	A	T	L	L	W	L	H	V	L	A	Q	K	N	M	T	I	T	W	G	Y	Y	F	R	T
Query Conservation
Alig confidence																																																	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	.	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Template Known Secondary structure																				T	T	S		S	S	S	S	S		S	S		S	T	T														.							S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.		.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.															.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	V	M	T	V	P	V	L	F	V	T	L	A	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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