Job Description Q47537 Confidence 99.07% Date Thu Jan 5 12:36:50 GMT 2012 Rank 36 Aligned Residues 246 % Identity 22% Template d2i6ea1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.50

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	.
Query Conservation																																																																																	.
Alig confidence																			.	.	.												.	.	.																																														.
Template Conservation																			.	.	.												.	.	.
Template Sequence		P	Y	R	A	G	W	I	H	F	T	N	V	A	P	I	L	D	.	.	.	S	L	E	L	P	P	G	V	T	A	I	.	.	.	T	G	V	P	T	Q	X	N	A	A	L	L	S	G	E	V	D	I	A	N	V	S	A	V	E	F	I	R	H	A	D	T	L	A	A	L	P	D	F	S	V	A	V	L	G	P
Template Known Secondary structure											G	G	G					T	.	.	.	T					T	T					.	.	.														S	S		S												T	T	T	T												S	S
Template Predicted Secondary structure																			.	.	.												.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A
Query Conservation
Alig confidence															.	.	.	.	.																																											.	.	.	.
Template Conservation															.	.	.	.	.																																											.	.	.	.
Template Sequence		V	Y	S	V	N	L	F	H	T	C	P	L	P	.	.	.	.	.	E	L	R	R	V	A	L	T	S	Q	S	A	X	S	V	A	L	L	E	V	L	L	R	Q	K	G	L	S	P	V	L	E	R	A	E	G	T	A	E	S	L	L	.	.	.	.	A	A	G	Y	D	G	V	L	R	I	G	D	D	A	L	R
Template Known Secondary structure			S	S						S	S		G	G	.	.	.	.	.	G								T	T															T	T										S							.	.	.	.	T	T	T		S						S
Template Predicted Secondary structure															.	.	.	.	.																																											.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		183	.	.																		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		L	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	.	.	.	.	.	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		E	W	Y	G	V	V	G	P	L	T	P	E	R	T	X	T	S	L	P	H	T	G	R	G	I	T	V	T	D	L	A	Q	E	W	F	D	L	T	G	H	P	F	T	F	A	V	W	A	Y	R	K	D	N	P	P	P	.	.	.	.	.	A	A	L	L	Q	A	X	R	E	A	R	R	R	G	I	G	H	L	A
Template Known Secondary structure							S					S	S	S		G	G	G			S			T	T															S	S											T	T	S				.	.	.	.	.																	T
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	L	K	Q	P	E	N	I	S	K	L	A	R	L	S	G	V	P	E	G	D	V	P	G	L	V	K	G	N	T	Y	L	T	P	Q	Q	Q	T	A	E	L	T	G	P	V	N	K	A	I	I	D	T	A	Q	F	L	K	E	Q	G	K	V	P	A	V	A	N
Query Conservation
Alig confidence		.	.	.	.	.	.																											.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation		.	.	.	.	.	.																											.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		.	.	.	.	.	.	E	V	S	Q	R	H	A	E	K	L	G	L	P	E	R	V	V	Q	H	Y	L	W	N	F	R	Y	.	.	.	.	.	.	.	.	H	L	E	A	P	D	R	L	G	L	R	E	F	A	D	L	A	.	.	.	.	.	V	P	G	H	A	E
Template Known Secondary structure		.	.	.	.	.	.									T	T	T												T		B		.	.	.	.	.	.	.	.	S																	.	.	.	.	.	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.																											.	.	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
								236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.									.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions