Job Description Q47537 Confidence 99.94% Date Thu Jan 5 12:36:50 GMT 2012 Rank 20 Aligned Residues 254 % Identity 18% Template d1zbma1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.30

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	.	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L
Query Conservation																				.
Alig confidence																				.						.									.
Template Conservation																										.									.
Template Sequence		K	I	R	V	A	H	T	P	D	A	D	D	A	F	X	F	Y	A	X	T	H	G	K	V	.	D	T	W	L	E	I	E	H	.	V	I	E	D	I	E	T	L	N	R	K	A	F	N	A	E	Y	E	V	T	A	I	S	A	H	A	Y	A	L	L	D	D	K	Y	R	I	L	S	A	G	A	S	V	G	D	G
Template Known Secondary structure									S	S												T	T		S	.			S						.												G	G	G	T			S										T	T	S	T	T	T					S	S						S	S
Template Predicted Secondary structure																										.									.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A
Query Conservation
Alig confidence									.	.	.	.	.																												.	.	.	.	.	.
Template Conservation									.	.	.	.	.																												.	.	.	.	.	.
Template Sequence		Y	G	P	V	V	V	A	.	.	.	.	.	K	S	E	I	S	L	D	G	K	R	I	A	V	P	G	R	Y	T	T	A	N	L	L	L	K	L	A	.	.	.	.	.	.	V	E	D	F	E	P	V	E	X	P	F	D	R	I	I	Q	A	V	L	D	E	E	V	D	A	G	L	L	I	H	E	G	Q	I	T
Template Known Secondary structure									.	.	.	.	.	S	S					T	T						S		T	T	S										.	.	.	.	.	.		S	S								G	G	G							T	T	S	S	S						S	G	G	G	G	T
Template Predicted Secondary structure									.	.	.	.	.																												.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.
Predicted Secondary structure																						.	.	.	.																																																							.
Query SS confidence																						.	.	.	.																																																							.
Query Sequence		L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	.	.	.	.	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S	K	L	A	R	L	S	.	G
Query Conservation																						.	.	.	.																																																							.
Alig confidence																						.	.	.	.												.	.	.																									.	.	.	.	.	.											.
Template Conservation																																					.	.	.																									.	.	.	.	.	.
Template Sequence		Y	A	D	Y	G	L	K	C	V	L	D	L	W	D	W	W	S	E	Q	V	K	L	P	L	P	L	G	L	N	A	I	R	R	D	L	.	.	.	S	V	E	V	Q	E	E	F	L	R	A	X	R	E	S	I	A	F	A	I	E	N	P	D	.	.	.	.	.	.	E	A	I	E	Y	A	X	K	Y	S	R	G
Template Known Secondary structure		G	G	G	G	T													T	T		S	S											T	T	S	.	.	.																						S			.	.	.	.	.	.							G	G	G		T	T
Template Predicted Secondary structure																																					.	.	.																									.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	E	G	D	V	P	G	L	V	K	G	N	T	Y	L	T	P	Q	Q	Q	T	A	E	L	T	G	P	V	N	K	A	I	I	D	T	A	Q	F	L	K	E	Q	G	K	V
Query Conservation
Alig confidence																	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		L	D	R	E	R	A	K	R	F	A	X	X	Y	V	N	.	.	.	.	D	Y	T	Y	N	X	P	E	S	V	D	A	A	L	K	K	L	Y	E	X	A	E	A	K	G	L	I
Template Known Secondary structure															S	S	.	.	.	.					S																		T	T	T
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions