Job Description Q47537 Confidence 91.49% Date Thu Jan 5 12:36:50 GMT 2012 Rank 136 Aligned Residues 200 % Identity 13% Template d1y9ua_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.39

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																									.	.																																				.	.	.	.
Query SS confidence																																									.	.																																				.	.	.	.
Query Sequence		V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	.	.	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	.	.	.	.
Query Conservation																																									.	.																																				.	.	.	.
Alig confidence							.																.																		.	.																																				.	.	.	.
Template Conservation							.																.
Template Sequence		D	E	V	S	L	.	Y	T	T	R	E	P	K	L	I	Q	P	L	L	D	A	.	F	A	K	D	S	G	I	K	V	N	T	V	F	V	K	D	G	L	L	E	R	V	R	A	E	G	D	K	S	P	A	D	V	L	M	T	V	D	I	G	N	L	I	D	L	V	N	G	G	V	T	Q	K	I	Q	S	Q	T
Template Known Secondary structure							.			S	S		G	G	G	T							.															S	S										G	G	G										S										T	T
Template Predicted Secondary structure							.																.
Template SS confidence
		6	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120						.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.										.	.	.	.	.								.																						.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.										.	.	.	.	.								.																						.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	.	.	K	T	I	S	K	P	E	D	L	.	.	.	.	.	I	G	K	R	I	A	V	.	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.										.	.	.	.	.								.																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.										.	.	.	.	.								.																						.	.	.	.
Template Conservation
Template Sequence		L	D	S	V	V	P	A	N	L	R	G	A	E	G	S	W	Y	A	L	S	L	R	D	R	V	L	Y	V	E	K	D	L	K	L	D	S	F	R	Y	G	D	L	A	D	P	K	W	K	G	K	V	C	I	R	S	G	Q	H	P	Y	N	T	A	L	V	A	A	M	I	A	H	D	G	A	E	A	T	E	K	W
Template Known Secondary structure						S		G	G	G	B		G	G	G	S															T	T							B	G	G	G	G	G		G	G	G	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
								149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.											190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	.	.	.	.	.	.	.	.	.	.	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D
Query Conservation		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	G	V	K	A	N	L	A	R	K	A	A	G	G	D	R	D	V	A	R	D	I	L	G	G	I	C	D	I	G	L	A	N	A	Y	Y	V	G	H	M	K	N	A	E	P	G	T	D	A	R	K	W	G	D	A	I	K	V	V	R	P	T	F	A	G	G	T	H	V	N	I	S	G	A	A	V	A	A	H
Template Known Secondary structure									B	S	S		S		S											T	T	S		S															S		T	T	S								T							B					B											T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	E	K	H	P	E	V	V	K	A	F	A	K
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	A	P	N	K	A	N	A	V	K	L	L	E
Template Known Secondary structure		.	.		T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				248	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions