Job Description Q47537 Confidence 91.38% Date Thu Jan 5 12:36:50 GMT 2012 Rank 137 Aligned Residues 259 % Identity 15% Template d1xvya_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.74

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																											.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	.	.	.	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																										.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		Y	N	A	Q	H	E	N	L	V	K	S	W	V	D	G	.	F	T	K	D	T	G	I	K	V	T	L	R	N	G	G	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F	A	P	L	D	A	A	T	L	A	Q	V	E
Template Known Secondary structure					S												.																											G	G	G				S					S	S	S									T	T		B									T	T	B
Template Predicted Secondary structure																	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
														94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120						.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.																												.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.																												.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	.	.	.	.	.	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	.	.	.	.	.	.	.	.	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.																												.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Q	Y	R	P	S	H	G	R	W	I	G	I	A	A	R	S	T	V	F	V	Y	N	P	A	K	L	S	D	A	Q	L	P	K	S	L	L	D	L	A	K	P	E	W	K	G	R	W	A	A	S	P	S	G	A	D	F	Q	A	I	V	S	A	L	L	E	L	K	G	E	K	A	T	L	A	W	L	K	A	M
Template Known Secondary structure		G	G	G	S		T	T		S	S														T	T	T	S		G	G	G			S	S	G	G	G	G	G	S	G	G	G	T	T	S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	.	.	.	.	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F
Query Conservation																																									.	.	.	.
Alig confidence																																									.	.	.	.
Template Conservation
Template Sequence		K	T	N	F	T	A	Y	K	G	N	S	T	V	M	K	A	V	N	A	G	Q	V	D	S	G	V	I	Y	H	Y	Y	P	F	V	D	G	A	K	T	G	E	N	S	N	N	I	K	L	Y	Y	F	K	H	Q	D	P	G	A	F	V	S	I	S	G	G	G	V	L	A	S	S	K	H	Q	Q	Q	A	Q	A	F
Template Known Secondary structure									S	S											T	S	S	S						T									T	T		T	T	T	T	T								T	T		G	G	G										B	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S	K	L	A	R	L	S	G	V	P	E	G	D	V	P	G	L	V	K	G	N	T	Y	L	T	P	Q	Q	Q	T	A	E	L	T	G	P	V	N	K	A	I	I	D	T	A	Q	F	L	K	E	Q	G	K	V
Query Conservation
Alig confidence			.	.	.	.	.	.	.							.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.							.	.	.	.	.	.	.	.
Template Sequence		I	.	.	.	.	.	.	.	K	W	I	T	G	K	.	.	.	.	.	.	.	.	Q	G	Q	E	I	L	R	T	N	N	A	F	E	Y	A	V	G	V	G	A	A	S	N	P	K	L	V	P	L	K	D	L	D	A	P	K	V	D	A	A	Q	L	N	S	K	K	V	V	E	L	M	T	E	A	G	L	L
Template Known Secondary structure			.	.	.	.	.	.	.					S		.	.	.	.	.	.	.	.									S	S	S			B			B	T	T					T	T	S			G	G	G	G							G	G	G													T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.							.	.	.	.	.	.	.	.
Template SS confidence
		246								.	.	.	250	.	.									.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions