Job Description Q47537 Confidence 99.67% Date Thu Jan 5 12:36:50 GMT 2012 Rank 26 Aligned Residues 226 % Identity 15% Template d1us5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.5

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																.																																												.	.	.	.	.	.
Query SS confidence																																.																																												.	.	.	.	.	.
Query Sequence		Q	A	Q	A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	.	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	.	.	.	.	.	.
Query Conservation																																.																																												.	.	.	.	.	.
Alig confidence																																.																																												.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	E	F	I	T	I	G	S	G	S	T	T	G	V	Y	F	P	V	A	T	G	I	A	K	L	V	N	D	A	N	V	G	I	R	A	N	A	R	S	T	G	G	S	V	A	N	I	N	A	I	N	A	G	E	F	E	M	A	L	A	Q	N	D	I	A	Y	Y	A	Y	Q	G	C	C	I	P	A	F	E	G
Template Known Secondary structure													T	T	S	S																T	S	S									S											T	T	S		S															T		S	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
						92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																					.																									.
Query SS confidence		.	.	.	.																																					.																									.
Query Sequence		.	.	.	.	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	.	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	.	E	I	V	N	L	Q	P	P	A	I	I	A	A	W
Query Conservation		.	.	.	.																																					.																									.
Alig confidence		.	.	.	.																																					.																									.
Template Conservation
Template Sequence		K	P	V	K	T	I	R	A	L	A	A	L	Y	P	E	V	V	H	V	V	A	R	K	D	A	G	I	R	T	V	A	D	L	K	G	K	R	V	V	V	G	D	V	G	S	G	T	E	Q	N	A	R	Q	I	L	E	A	Y	G	L	T	F	D	D	L	G	Q	A	I	R	V	S	A	S	Q	G	I	Q	L	M
Template Known Secondary structure					T	T																		T	T	S	S		S	S	G	G	G	G	T	T	S							T	T														T	T			G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.																										.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	G	D	I	D	G	A	Y	V	W	.	.	.	.	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K
Query Conservation													.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	D	K	R	A	D	A	L	F	Y	T	V	G	L	G	A	S	A	I	Q	Q	L	A	L	T	T	P	I	A	L	V	A	V	D	L	N	R	I	Q	A	I	A	K	K	Y	P	F	Y	V	G	F	N	I	P	G	G	T	Y	K	G	V	D	V	T	T	P	T	V	A	V	Q	A	M	L	I	A	S	E	R	L
Template Known Secondary structure			T	T	S		S								T	T											S														T	T	T	T	T		T	T								T	T	S	B	T	T	B		S															T	T	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	E	T	V	Y	K	F	M	K	A	V	F	G	N	L	E	A	F	K	K	I	H	P	N	L	E	R
Template Known Secondary structure															S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions