Return to main results Retrieve Phyre Job Id

Job DescriptionQ47537
Confidence95.64%DateThu Jan 5 12:36:50 GMT 2012
Rank114Aligned Residues208
% Identity13%Templated1twya_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.65

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40......... 50.........60.........70.........80.........90.........100.
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Query Sequence  VNVTVAYQTSAEPAKVAQADNTFAKES. GATVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASK
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Template Sequence  SEITISGSTSVARIXDVLAEK. YNQQHPETYVAVQGVGS. TAGISLLKKGVADIAXTSRYLTESEAQNTLHTFTLAFDGL
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   28.30.........40........ .50.........60..... ....70.........80.........90.........100.....
 
   102.......110........ .120.........130.........140.........150......
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Query Sequence  LGNSEALVVKKTISKPE. . . . . . . . . . . . . . . . . . . . . DLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNL. . . .
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Template Sequence  A. . . IVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLXGLTKTVKDREVSDVAPTAL
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BGGGGTS
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   106 ...110.........120.........130.........140.........150.........160.........170.........180..
 
   157..160.........170.........180........ .190.........200.........210.........220........
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Query Sequence  . . . QPPAIIAAWQRGDIDGAYVWAPAVNALEKDGK. . . . . VLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA
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Template Sequence  VVNSNSXXKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSD. . . NADEQTKEFIAFL
Template Known Secondary structure  SS
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   183......190.........200.........210.........220.........230.........240...... ...250.........
 
   229 230........
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Query Sequence  I. . DAQQPYIAN
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Template Sequence  KSESAKKLIVEY
Template Known Secondary structure  ST
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   260.........270.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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