Job Description Q47537 Confidence 78.98% Date Thu Jan 5 12:36:50 GMT 2012 Rank 156 Aligned Residues 199 % Identity 18% Template d1nnfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.10

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																															.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	.	.	.	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	.	.	.	.	.	.	.	.
Query Conservation																																															.	.	.																									.	.	.	.	.	.	.	.
Alig confidence						.																.																									.	.	.																									.	.	.	.	.	.	.	.
Template Conservation						.																.
Template Sequence		D	I	T	V	.	Y	N	G	Q	Q	K	E	A	A	T	A	V	A	K	A	.	F	E	Q	E	T	G	I	K	V	T	L	N	S	G	K	S	E	Q	L	A	G	Q	L	K	E	E	G	D	K	T	P	A	D	V	F	Y	T	E	Q	T	A	T	F	A	D	L	S	E	A	G	L	L	A	P	I	S	E	Q	T
Template Known Secondary structure						.				S												.					S																						G	G	G				S					S		G	G	G							T	T		B
Template Predicted Secondary structure						.																.
Template SS confidence
		1	.	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
																									93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.
Template Conservation
Template Sequence		I	Q	Q	T	A	Q	K	G	V	P	L	A	P	K	K	D	W	I	A	L	S	G	R	S	R	V	V	V	Y	D	H	T	K	L	S	E	K	D	M	E	K	S	V	L	D	Y	A	T	P	K	W	K	G	K	I	G	Y	V	S	T	S	G	A	F	L	E	Q	V	V	A	L	S	K	M	K	G	D	K	V	A
Template Known Secondary structure				T	T			T	T					T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	G	S	G	G	G	T	T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
								148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																								.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																								.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	.	.	.	.	.	.	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E
Query Conservation		.	.	.	.	.	.																																								.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																								.	.	.	.	.	.																											.	.
Template Conservation																																																																															.	.
Template Sequence		L	N	W	L	K	G	L	K	E	N	G	K	L	Y	A	K	N	S	V	A	L	Q	A	V	E	N	G	E	V	P	A	A	L	I	N	N	Y	Y	W	Y	N	L	A	K	E	K	G	V	E	N	L	K	S	R	L	Y	F	V	R	H	Q	D	P	G	A	L	V	S	Y	S	G	A	A	V	L	K	A	.	.	S
Template Known Secondary structure																S	S										T	T	S		S																		G	G	G		S								T	T		G	G	G										B	T	T	.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.
		216	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	P	E	V	V	K	A	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	Q	A	E	A	Q	K	F	V	D
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions