Job Description Q47537 Confidence 97.80% Date Thu Jan 5 12:36:50 GMT 2012 Rank 73 Aligned Residues 213 % Identity 13% Template d1ii5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.									.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure											.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.
Query Sequence		A	Q	A	V	N	V	T	V	A	.	.	.	.	.	.	.	.	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V
Query Conservation											.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.																.
Template Conservation																																		.
Template Sequence		G	S	A	M	A	L	K	V	G	V	V	G	N	P	P	F	V	F	Y	G	A	F	T	G	I	S	L	D	V	W	R	A	.	V	A	E	S	Q	K	W	N	S	E	Y	V	R	Q	N	S	I	S	A	G	I	T	A	V	A	E	G	E	L	D	I	L	I	G	P	I	S	V	T	P	E	R	A	A	I	E	G
Template Known Secondary structure				S											T	T	T								S									.						T									S											T	T	S		S														T	S	T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	.	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I
Query Conservation																						.
Alig confidence																						.																													.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.
Template Sequence		I	T	F	T	Q	P	Y	F	S	S	G	I	G	L	L	I	P	G	T	A	T	P	L	F	R	S	V	G	D	L	K	N	K	E	V	A	V	V	R	D	T	T	A	V	D	W	A	N	F	.	.	.	.	.	.	.	.	Y	Q	A	D	V	R	E	T	N	N	L	T	A	A	I	T	L	L	Q	K	K	Q	V
Template Known Secondary structure																			G	G	G	T	T	T		S	S	G	G	G	G	T	T							T	T	S									.	.	.	.	.	.	.	.	T	T							S	S										T	T	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S
Query Conservation
Alig confidence																																										.	.	.	.	.	.				.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.				.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		E	A	V	M	F	D	R	P	A	L	I	Y	Y	T	R	Q	N	P	N	L	N	L	E	V	T	E	I	R	V	S	L	E	P	Y	G	F	V	L	K	E	.	.	.	.	.	.	N	S	P	.	.	.	.	L	Q	K	T	I	N	V	E	M	L	N	L	L	Y	S	R	.	.	.	.	.	.	.	V	I	A	E
Template Known Secondary structure		S																	G	G	G						S			S											T	.	.	.	.	.	.	T		T	.	.	.	.	T														T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.				.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.							.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.
		251	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	R	L	S	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	E	R	W	L	G	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions