Job Description Q47537 Confidence 97.56% Date Thu Jan 5 12:36:50 GMT 2012 Rank 90 Aligned Residues 208 % Identity 19% Template d1amfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.75

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		K	I	T	V	F	A	A	A	S	L	T	N	A	M	Q	D	I	A	T	Q	.	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L	G
Template Known Secondary structure									G	G	G											.																										T				S					S	S										T	T		B		G	G	G
Template Predicted Secondary structure																						.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		104	.	.	.	.	.	110	.	.	.								.	.	.	.	.	.	120	.					.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.									.	.	.	.							.	.																							.	.
Query SS confidence												.	.	.	.	.	.	.									.	.	.	.							.	.																							.	.
Query Sequence		N	S	E	A	L	V	V	K	K	T	.	.	.	.	.	.	.	I	S	K	P	E	D	L	I	.	.	.	.	G	K	R	I	A	V	.	.	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	.	.	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G
Query Conservation												.	.	.	.	.	.	.									.	.	.	.							.	.																							.	.
Alig confidence												.	.	.	.	.	.	.									.	.	.	.							.	.																							.	.
Template Conservation
Template Sequence		N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R	N
Template Known Secondary structure										T	T									S	T	T								T	T								T	T	T														T	T						G	G	G					S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	.	.	D	A	Q	Q	P	Y	I	A	N
Query Conservation																																																															.	.
Alig confidence													.	.	.																															.	.	.															.	.
Template Conservation													.	.	.																															.	.	.
Template Sequence		E	A	P	L	G	I	V	Y	G	S	D	.	.	.	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	.	.	.	H	N	N	A	T	V	K	A	F	Y	D	Y	L	K	G	P	Q	A	A	E	I	F	K	R	Y
Template Known Secondary structure		S	S	S									.	.	.					S	S									G	G	G	S										B	T	T	.	.	.			S											T	S										T
Template Predicted Secondary structure													.	.	.																															.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions