Job Description Q47537 Confidence 100.00% Date Thu Jan 5 12:36:50 GMT 2012 Rank 2 Aligned Residues 291 % Identity 18% Template c3uifA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt Resolution 2.60 Å

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		24	.	.	.	.	.	30							.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure									.	.	.	.	.	.																				.	.	.	.											.	.	.
Query SS confidence									.	.	.	.	.	.																				.	.	.	.											.	.	.
Query Sequence		N	V	T	V	A	Y	Q	.	.	.	.	.	.	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	.	.	.	.	G	A	T	V	D	W	R	K	F	D	.	.	.	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q
Query Conservation									.	.	.	.	.	.																				.	.	.	.											.	.	.
Alig confidence									.	.	.	.	.	.																				.	.	.	.											.	.	.
Template Conservation
Template Sequence		V	V	R	I	A	S	V	A	T	N	V	G	G	K	T	V	Y	A	G	S	A	S	L	V	V	N	G	A	F	P	E	E	L	R	K	Q	G	I	K	V	E	W	V	P	A	A	X	A	S	V	G	P	V	I	N	E	G	F	A	S	G	K	I	D	F	G	I	Y	G	D	L	P	P	I	I	L	N	A	S	K
Template Known Secondary structure													T	T						T								S	S								T	T										T	T												T	T									S										S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		V	P	I	E	V	F	L	L	A	S	K	.	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		P	T	V	Q	L	V	A	P	W	G	T	T	S	N	S	Y	L	V	V	P	K	N	S	T	A	K	S	I	K	D	L	K	G	K	K	I	A	L	H	R	G	R	P	W	E	L	A	F	S	N	L	L	Q	S	E	G	L	T	F	K	D	F	K	I	V	N	V	N	P	Q	V	G	A	A	A	L	A	S	G	T
Template Known Secondary structure																						T	T					S	G	G	G	G	T	T	S						T	T	S	T												T	T			G	G	G	S																	T	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I
Query Conservation
Alig confidence																																																																										.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.
Template Sequence		V	D	G	F	F	S	L	F	D	S	Y	I	L	E	D	R	G	V	G	K	I	I	W	S	T	K	T	A	P	V	D	W	K	L	X	G	G	V	W	A	R	N	D	F	V	K	Q	N	P	E	I	T	Q	A	I	V	T	A	Y	L	K	S	V	H	W	V	A	Q	D	E	N	K	.	.	.	.	.	E	T	Y
Template Known Secondary structure		S	S					S	T	T							T	T	S							G	G	G	S		G	G	G	S																																			S	G	G	G		.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	L	A	R	L	S	G	V	P	E	G	D	V	P	G	L	V	K	G	N	T	Y	L	T	P	Q	Q	Q	T	A	E	L	T	G	P	V	N	K	A	I	I	D	T	A	Q	F	L	K	E	Q	G	K	V	P	A	V	A	N	D	Y	S	Q	Y	V	T	S	R	F	V	Q
Query Conservation
Alig confidence																																																												.
Template Conservation																																																												.
Template Sequence		I	R	E	Y	S	N	K	I	Y	P	E	S	V	N	R	R	E	Y	D	Q	D	N	V	S	W	R	Q	R	W	S	P	L	Y	D	V	A	L	Q	E	H	Y	R	K	A	V	A	Y	A	Q	A	S	G	L	T	R	T	Q	A	.	D	V	Q	Q	X	L	N	P	H	F	V	A
Template Known Secondary structure					T	S		T	T	S								T	T	T	T		S	S		T	T	G	G	G																						T	T	S		S	S			.						B		T
Template Predicted Secondary structure																																																												.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions