Job Description Q47537 Confidence 35.99% Date Thu Jan 5 12:36:50 GMT 2012 Rank 207 Aligned Residues 216 % Identity 14% Template c3py7A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution Resolution 2.29 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																										.														.																			.	.	.	.	.	.	.
Query SS confidence																																										.														.																			.	.	.	.	.	.	.
Query Sequence		Q	A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	.	G	A	S	I	V	R	A	L	A	S	G	D	V	.	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	.	.	.	.	.	.	.
Query Conservation																																										.														.																			.	.	.	.	.	.	.
Alig confidence																																										.														.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	G	K	L	V	I	W	I	N	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	D	T	G	I	K	V	T	V	E	H	P	D	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	F	G	G	Y	A	Q	S	G	L	L	A	E	I	T	P	A
Template Known Secondary structure			T	T								T	T	S																	S									T	T											T	T		S		S						G	G	G							T	T		B
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																				92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.										.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.										.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	.	.	.	K	T	I	S	K	P	E	D	L	.	.	.	.	.	.	.	.	.	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.										.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	F	Q	D	K	L	Y	P	F	T	W	D	A	V	R	Y	N	G	K	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	N	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L	M	F	N	L	Q	E	P	Y	F	T	W	P	L	I	A
Template Known Secondary structure						T	T	B								T			T	T				S														T	T	T		S	S			S	B	G	G	G										T	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		142	.	.	.	.	.	.	.	150										.	.	.	.	.																							.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure											.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	H	W	G	I	K	P	G	Q	.	.	.	.	.	.	.	.	.	V	E	I	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L
Query Conservation											.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	D	T	D	Y	S	I	A	E	A	A	F	N	K	G	E	T	A	M	T	I	N	G	P	W	A	W	S	N	I	D	T	S	A	V	N	Y
Template Known Secondary structure			T	T								T	T									S	S	S																T	T	S	S		T	T												T	T	S								G	G	G							S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		191	.	.	.	.	.						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																																	.	.	.
Query SS confidence								.	.	.	.	.																																	.	.	.
Query Sequence		T	D	S	E	Q	V	.	.	.	.	.	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	.	.	.	I	D	A	Q	Q	P	Y	I	A	N
Query Conservation								.	.	.	.	.																																	.	.	.
Alig confidence								.	.	.	.	.																	.	.															.	.	.
Template Conservation																													.	.
Template Sequence		G	V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	.	.	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D
Template Known Secondary structure										T	T															B	T	T	.	.		S												T	T	S	S
Template Predicted Secondary structure																													.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions