Job Description Q47537 Confidence 99.04% Date Thu Jan 5 12:36:50 GMT 2012 Rank 39 Aligned Residues 199 % Identity 17% Template c3pppA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc Resolution 2.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																												.											.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.											.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	.	S	G	A	T	V	D	W	R	K	F	.	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.											.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.											.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	T	I	K	I	G	A	Q	S	M	T	E	S	E	I	V	A	N	M	I	A	Q	L	I	E	H	D	T	D	L	N	T	A	L	V	K	N	L	G	S	N	Y	V	Q	H	Q	A	M	L	G	G	D	I	D	I	S	A	T	R	Y	S	G	T	D	L	T	S	T	L	G	K	E	A	E	K	D	P	K	K	A
Template Known Secondary structure										S	S																			S											S										T	T	S		S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
							85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150
Predicted Secondary structure		.	.	.	.	.																												.	.	.	.	.																																						.	.	.	.
Query SS confidence		.	.	.	.	.																												.	.	.	.	.																																						.	.	.	.
Query Sequence		.	.	.	.	.	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	.	.	.	.	.	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	.	.	.	.	G	Q
Query Conservation		.	.	.	.	.																												.	.	.	.	.																																						.	.	.	.
Alig confidence		.	.	.	.	.																												.	.	.	.	.																																						.	.	.	.
Template Conservation
Template Sequence		L	N	I	V	Q	N	E	F	Q	K	R	F	S	Y	K	W	F	D	S	Y	G	F	D	N	T	Y	A	F	T	V	T	K	K	F	A	E	K	E	H	I	N	T	V	S	D	L	K	K	N	A	S	Q	Y	K	L	G	V	D	N	A	W	L	K	R	K	G	D	G	Y	K	G	F	V	S	T	Y	G	F	E	F
Template Known Secondary structure																						S		B																T		S	B	G	G	G	G	G	G	G	G	G	G							T	T	T	T	T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F
Query Conservation
Alig confidence																																							.	.	.
Template Conservation																																							.	.	.
Template Sequence		G	T	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	N	G	K	M	D	A	V	L	A	Y	S	T	D	G	R	I	K	A	Y	D	L	.	.	.	K	I	L	K	D	D	K	R	F	F	P	P	Y	D	C	S	P	V	I	P	E	K	V	L	K	E	H	P	E	L	E	G	V	I
Template Known Secondary structure		S							G	G	G							T	T	S		S						T	T		T					T	T		.	.	.				B		T	T			S				B													S	T	T
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions