Return to main results Retrieve Phyre Job Id

Job DescriptionQ47537
Confidence59.51%DateThu Jan 5 12:36:50 GMT 2012
Rank173Aligned Residues138
% Identity15%Templatec3onmB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90.........100...
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  NVTVAYQTSAEPAKVAQADNTFAKESGATVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLG
Query Conservation   
 
             
 

 

  




            

  
 

               
     
       
Alig confidence 




































.



















......












...
Template Conservation 




         

  
  
    

 
 
     .            
       ......        
    ...
Template Sequence  SLIIGASDDTADTLLPFLLNRVATLYPLAIDVRVKRS. PFIADMLSSGEVDLAITTAK. . . . . . VDSHPHVILRTSP. . .
Template Known Secondary structure 

TTTTTS





G.GGTTS
SSS
......
SSS

...
Template Predicted Secondary structure 



.


















......












...
Template SS confidence 















































































   100.........110.........120.........130...... ...140.........150...... ...160.........
 
   104.....110.........120.........130.........140.........150.........160.........170....
Predicted Secondary structure 



























Query SS confidence 






































































Query Sequence  NSEALVVKKTISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPAIIAAWQRGDIDGAY
Query Conservation      
   
 
 
  




 
    
          
   
     
  
         

  
 


  
Alig confidence  ..










































.
























Template Conservation  ..   
                                       .               
  
 


 
Template Sequence  . . TLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPW. RIAYVASSLSAIRAAVRAGLGVTAR
Template Known Secondary structure  ..TT



SSS
SSS
TT

.SSTTS
B
Template Predicted Secondary structure  ..


















.





Template SS confidence 






































































   171........180.........190.........200.........210... ......220.........230........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions