Job Description Q47537 Confidence 97.29% Date Thu Jan 5 12:36:50 GMT 2012 Rank 94 Aligned Residues 203 % Identity 15% Template c3i6vA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein; PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine Resolution 2.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.											.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.						.
Query SS confidence															.	.	.	.	.	.	.	.	.	.						.
Query Sequence		N	V	T	V	A	Y	Q	T	S	A	E	P	A	.	.	.	.	.	.	.	.	.	.	K	V	A	Q	A	.	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P
Query Conservation															.	.	.	.	.	.	.	.	.	.						.
Alig confidence															.	.	.	.	.	.	.	.	.	.						.																		.
Template Conservation																																																.
Template Sequence		T	V	R	M	G	T	E	G	A	Y	P	P	Y	N	F	I	N	D	A	G	E	V	D	G	F	E	R	E	L	G	D	E	L	C	K	R	A	G	L	T	C	E	W	V	K	N	.	D	W	D	S	I	I	P	N	L	V	S	G	N	Y	D	T	I	I	A	G	M	S	I	T	D	E	R	D	E	V	I	D	F
Template Known Secondary structure									S			T	T	T					T	T	S				S														T									.		G	G	G							T	T	S		S				S	S		B							T	T	S
Template Predicted Secondary structure																																																.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G
Query Conservation
Alig confidence						.	.	.																	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation						.	.	.																	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		T	Q	N	Y	.	.	.	I	P	P	T	A	S	S	Y	V	A	T	S	D	G	A	D	.	.	.	.	.	L	S	G	I	V	A	A	Q	T	A	T	I	Q	A	G	Y	I	A	E	.	.	.	.	.	.	.	.	S	G	A	T	L	V	E	F	A	T	P	E	E	T	I	A	A	V	R	N	G	E	A	D	A
Template Known Secondary structure						.	.	.											S	S	T	T			.	.	.	.	.	T	T	S						T	T	S									.	.	.	.	.	.	.	.	S	S	S						S	S										T	T	S	S	S
Template Predicted Secondary structure						.	.	.																	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150						.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S	K	L
Query Conservation
Alig confidence																																							.	.	.	.	.						.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.						.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		V	F	A	D	R	D	Y	L	V	P	I	V	A	E	S	G	G	E	L	M	F	V	G	D	D	V	P	L	G	G	G	V	G	M	G	L	R	.	.	.	.	.	E	S	D	G	E	.	.	.	.	L	R	G	K	F	D	A	A	I	T	S	M	K	E	D	G	.	.	.	.	.	.	.	T	L	N	T	M	I
Template Known Secondary structure																T	T	T	S	S										S	S								.	.	.	.	.	T	T				.	.	.	.															T	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.						.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.								.	.	.	.	.	.
		253	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	S	G	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	W	F	G	E	D
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions