Job Description Q47537 Confidence 99.95% Date Thu Jan 5 12:36:50 GMT 2012 Rank 15 Aligned Residues 208 % Identity 17% Template c3gxaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 Resolution 2.25 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	V	F	G	T	T	V	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	G	Y	T	V	K	L	V	E	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K	P	Y	L	D	D	F	K	K	E	H	N	L	D	I	T	E	V	F	Q	V	P	T
Template Known Secondary structure									T	T									T							T	T	T									S	S	S	S									T	S		S																		T											B
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																				.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	.	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A
Query Conservation																				.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		A	P	L	G	L	Y	P	G	K	.	L	K	S	L	E	E	V	K	D	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D	I	A	E	N	L	K	N	I	K	I	V	E	L	E	A	A	Q	L	P	R
Template Known Secondary structure									S	S	.				G	G	G			T	T								S														T	T	S	S				T	T			G	G	G			G	G	G					T	T									G	G	G
Template Predicted Secondary structure											.
Template SS confidence
		124	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	.	.	D	A	Q	Q	P	Y	I	A	N	P	D
Query Conservation																																																																				.	.
Alig confidence				.	.																														.	.	.	.													.	.																.	.
Template Conservation				.	.																														.	.	.	.													.	.
Template Sequence		S	R	.	.	A	D	V	D	F	A	V	V	N	G	N	Y	A	I	S	S	G	M	K	L	T	E	A	L	F	Q	E	P	S	.	.	.	.	F	A	Y	V	N	W	S	A	V	K	T	A	.	.	D	K	D	S	Q	W	L	K	D	V	T	E	A	Y	N	S	D	A	F	K	A	Y	A	H	K	R	F	E
Template Known Secondary structure			T	.	.	T	T	S	S												T	T			G	G	G		S						.	.	.	.		T	T								G	G	.	.	G	T	T											T	T	S											S	T
Template Predicted Secondary structure				.	.																														.	.	.	.													.	.
Template SS confidence
		203	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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