Job Description Q47537 Confidence 99.05% Date Thu Jan 5 12:36:50 GMT 2012 Rank 38 Aligned Residues 259 % Identity 10% Template c3fxbB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of the ectoine-binding protein ueha Resolution 2.90 Å

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		24	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure							.														.	.																	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.														.	.																	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	T	V	A	.	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	.	.	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	.	.	.	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.														.	.																	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.														.	.																	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	W	R	Y	A	F	E	E	A	M	T	D	V	Q	G	V	Y	A	Q	K	F	K	E	E	I	E	A	N	S	D	H	E	I	Q	L	F	P	Y	G	T	L	G	E	S	A	D	I	M	E	Q	T	Q	D	G	I	L	Q	F	V	D	Q	S	P	G	F	T	G	S	L	I	P	E	A	Q	V	F	F	V	P	Y
Template Known Secondary structure								S	S		S	S	S																S	S	S								T	T	S	S		S											T	S		S										T	T	T	S	G	G	G	G	G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
																										86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.																																	.
Template Conservation																																															.	.																																	.
Template Sequence		L	L	P	T	D	Q	D	H	L	A	R	F	F	K	E	S	K	A	I	N	D	M	F	K	P	L	Y	A	D	Q	G	L	E	L	L	N	M	F	P	E	G	E	V	A	M	.	.	T	T	K	T	P	V	T	T	C	S	D	L	D	E	V	K	F	R	V	M	T	N	P	L	L	V	E	S	Y	K	A	F	.
Template Known Secondary structure			S		S																	T	T	S						T	T	T															.	.			S	S			S	S	G	G	G	S	T	T							S												.
Template Predicted Secondary structure																																															.	.																																	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																																			.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																			.	.	.
Template Sequence		.	.	.	.	.	.	.	.	G	A	T	P	T	P	L	P	W	G	E	V	Y	G	G	L	Q	T	N	V	I	Q	G	Q	E	N	P	T	F	F	L	Y	S	T	K	I	Y	E	V	T	D	Y	I	T	Y	A	G	H	N	N	.	.	.	F	T	T	A	V	M	A	N	K	D	F	Y	D	G	L	S	A	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	S							G	G	G							T	T	S														T	T	G	G	G	S												.	.	.															S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																			.	.	.
Template SS confidence
										159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		222	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.					.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure				.																															.	.	.	.
Query SS confidence				.																															.	.	.	.
Query Sequence		K	A	.	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S	K	L	A	.	.	.	.	R	L	S	G	V	P	E	G	D	V	P	G	L	V	K	G	N	T	Y	L	T	P	Q	Q	Q	T	A	E	L	T	G	P	V	N	K	A	I	I	D	T	A	Q	F
Query Conservation				.																															.	.	.	.
Alig confidence				.																															.	.	.	.																			.
Template Conservation																																																									.
Template Sequence		Q	Q	L	V	Q	N	A	A	L	A	A	Y	D	H	T	V	V	Y	Q	Q	Q	A	A	D	T	E	L	A	K	I	M	E	A	K	P	E	M	Q	V	T	V	L	T	D	E	Q	R	S	C	F	K	E	A	A	A	.	E	V	E	A	K	F	I	E	M	T	G	D	S	G	A	A	I	L	K	Q	M	K	A	D
Template Known Secondary structure																									T	T										T	T																				.
Template Predicted Secondary structure																																																									.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		297
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		307

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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