Job Description Q47537 Confidence 96.63% Date Thu Jan 5 12:36:50 GMT 2012 Rank 102 Aligned Residues 194 % Identity 12% Template c3fj7A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:major antigenic peptide peb3; PDBTitle: crystal structure of l-phospholactate bound peb3 Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		V	N	L	Y	G	P	G	G	P	H	T	A	L	K	D	I	A	N	K	.	Y	S	E	K	T	G	V	K	V	N	V	N	F	G	P	Q	A	T	W	F	E	K	A	K	K	D	A	D	I	L	F	G	A	S	D	Q	S	A	L	A	I	A	S	D	F	G	K	D	F	N	V	S	K	I	K	P	L	Y	F	R
Template Known Secondary structure								T	T	T											.														S		G	G	G	T									S					S	S										T	T	G	G	G	S		G	G	G
Template Predicted Secondary structure																					.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		105	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.										150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.										.	.	.	.																												.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.										.	.	.	.																												.	.	.	.	.	.	.	.	.
Query Sequence		S	E	A	L	V	V	K	K	T	.	.	.	.	I	S	K	P	E	D	L	I	G	.	.	.	.	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	.	.	.	.	.	.	.	.	.	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R
Query Conservation											.	.	.	.										.	.	.	.																												.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.										.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	I	I	L	T	Q	K	G	N	P	L	K	I	K	G	L	K	D	L	A	N	K	K	V	R	I	V	V	P	E	G	A	G	K	S	N	T	S	G	T	G	V	W	E	D	M	I	G	R	T	Q	D	I	K	T	I	Q	N	F	R	N	N	I	V	A	F	V	P	N	S	G	S	A	R	K	L	F	A	Q
Template Known Secondary structure								S	T	T		T	T				S							S										T	T	S	S			T	T	T	T							G	G	G												T						S	S										T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K
Query Conservation
Alig confidence																						.	.	.																							.	.	.	.
Template Conservation																						.	.	.																							.	.	.	.
Template Sequence		D	Q	A	D	A	W	I	T	W	I	D	W	S	K	S	N	P	D	I	G	.	.	.	T	A	V	A	I	E	K	D	L	V	V	Y	R	T	F	N	V	I	A	K	E	G	.	.	.	.	A	S	K	E	T	Q	D	F	I	A
Template Known Secondary structure		T			S													T	T	S		.	.	.							T	T	T												T	T	.	.	.	.
Template Predicted Secondary structure																						.	.	.																							.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions