Job Description Q47537 Confidence 99.07% Date Thu Jan 5 12:36:50 GMT 2012 Rank 37 Aligned Residues 214 % Identity 16% Template c3b50A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. Resolution 1.40 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.						.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																							.	.	.																					.	.	.	.	.																									.	.	.	.	.	.	.
Query SS confidence																							.	.	.																					.	.	.	.	.																									.	.	.	.	.	.	.
Query Sequence		Q	A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	.	.	.	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	.	.	.	.	.	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	.	.	.	.	.	.	.
Query Conservation																							.	.	.																					.	.	.	.	.																									.	.	.	.	.	.	.
Alig confidence																							.	.	.																					.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	Y	D	L	K	F	G	M	N	A	G	T	S	S	N	E	Y	K	A	A	E	M	F	A	K	E	V	K	E	K	S	Q	G	K	I	E	I	S	L	Y	P	S	S	Q	L	G	D	D	R	A	M	L	K	Q	L	K	D	G	S	L	D	F	T	F	A	E	S	A	R	F	Q	L	F	Y	P	E	A	A	V
Template Known Secondary structure											S	S		T	T	S																	T	T	T	S								T	T	T	T													T	S								G	G	G	G	G	G	T	S	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																														86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																												.	.	.	.
Template Conservation																																														.	.																												.	.	.	.
Template Sequence		F	A	L	P	Y	V	I	S	N	Y	N	V	A	Q	K	A	L	F	D	T	E	F	G	K	D	L	I	K	K	M	D	K	D	L	G	V	T	L	L	S	Q	A	Y	N	.	.	G	T	R	Q	T	T	S	N	R	A	I	N	S	I	A	D	M	K	G	L	K	L	R	V	P	N	A	.	.	.	.	A	T	N
Template Known Secondary structure		G	G	S	T	T	T	S		S										S	S																									.	.								S	S				S	G	G	G	G	T	T							S		.	.	.	.
Template Predicted Secondary structure																																														.	.																												.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H
Query Conservation
Alig confidence													.	.	.	.	.																																															.	.	.
Template Conservation													.	.	.	.	.																																															.	.	.
Template Sequence		L	A	Y	A	K	Y	V	G	A	S	P	.	.	.	.	.	T	P	M	A	F	S	E	V	Y	L	A	L	Q	T	N	A	V	D	G	Q	E	N	P	L	A	A	V	Q	A	Q	K	F	Y	E	V	Q	K	F	L	A	M	T	N	H	I	L	.	.	.	N	D	Q	L	Y	L	V	S	N	E	T	Y	K	E	L
Template Known Secondary structure								T	T				.	.	.	.	.					G	G	G							T	T	S	S	S												T	T	G	G	G	S		S										.	.	.													T	T	S
Template Predicted Secondary structure													.	.	.	.	.																																															.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.				.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		218	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		P	E	V	V	K	A	F	A	.	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		P	E	D	L	Q	K	V	V	K	D	A	A	E	N	A	A	K	Y	H	T	K	L	F	V	D	G	E	K	D	L	V	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions