Job Description Q47537 Confidence 99.11% Date Thu Jan 5 12:36:50 GMT 2012 Rank 33 Aligned Residues 270 % Identity 15% Template c2zzxD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate Resolution 1.75 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																						.	.	.																				.	.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.																				.	.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	.	.	.	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	.	.	.	.	.	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.																				.	.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence																						.	.	.																				.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Y	R	W	R	I	Q	T	A	W	D	A	G	T	V	G	Y	S	L	F	Q	K	F	T	E	R	V	K	E	L	T	D	G	Q	L	E	V	Q	P	F	P	A	G	A	V	V	G	T	F	D	M	F	D	A	V	K	T	G	V	L	D	G	M	N	P	F	T	L	Y	W	A	G	R	M	P	V	T	A	F	L
Template Known Secondary structure										S	S		T	T	S																	T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S					B	G	G	G	G	T	T	T		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		3033	.	.	.	.	.	.	3040	.	.	.	.	.	.	.	.	.	3050	.	.	.	.	.	.	.	.	.	3060	.	.	.	.	.	.	.	.	.	3070	.	.	.	.	.	.	.	.	.	3080	.	.	.	.	.	.	.	.	.	3090	.	.	.	.	.	.	.	.	.	3100	.	.	.	.	.	.	.	.	.	3110	.	.
																													86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																								.	.	.	.	.
Template Conservation																																																	.	.																								.	.	.	.	.
Template Sequence		S	S	Y	A	L	G	L	D	R	P	D	Q	W	E	T	W	F	Y	S	L	G	G	L	D	I	A	R	R	A	F	A	E	Q	G	L	F	Y	V	G	P	V	Q	H	D	L	N	I	.	.	I	H	S	K	K	P	I	R	R	F	E	D	F	K	G	V	K	L	R	V	P	G	G	.	.	.	.	.	M	I	A
Template Known Secondary structure		S			T	T	S			S										T	S	S											T	T	T														.	.				S	S				S	G	G	G	G	T	T							S		.	.	.	.	.
Template Predicted Secondary structure																																																	.	.																								.	.	.	.	.
Template SS confidence
		3113	.	.	.	.	.	.	3120	.	.	.	.	.	.	.	.	.	3130	.	.	.	.	.	.	.	.	.	3140	.	.	.	.	.	.	.	.	.	3150	.	.	.	.	.	.	.	.	.			3160	.	.	.	.	.	.	.	.	.	3170	.	.	.	.	.	.	.	.	.	3180	.	.						.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	.	.	.	.	.	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F
Query Conservation																																																													.	.	.	.	.
Alig confidence											.	.	.	.	.																																														.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		E	V	F	A	A	A	G	A	S	.	.	.	.	.	T	V	L	L	P	G	G	E	V	Y	P	A	L	E	R	G	V	I	D	A	A	D	F	V	G	P	A	V	N	Y	N	L	G	F	H	Q	V	A	K	Y	I	I	M	G	P	P	E	T	P	A	I	H	Q	P	V	D	L	M	D	F	T	I	N	L	N	R
Template Known Secondary structure							T	T			.	.	.	.	.						G	G	G							T	T	S		S					S								T	T													T	T	S	S		S	S		S	S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		3186	.	.	.	3190	.	.	.	.						.	.	.	.	.	3200	.	.	.	.	.	.	.	.	.	3210	.	.	.	.	.	.	.	.	.	3220	.	.	.	.	.	.	.	.	.	3230	.	.	.	.	.	.	.	.	.	3240	.	.	.	.	.	.	.	.	.	3250	.	.	.	.	.	.	.	.	.	3260
		214	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure														.																												.	.
Query SS confidence														.																												.	.
Query Sequence		A	E	K	H	P	E	V	V	K	A	F	A	.	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S	K	L	.	.	A	R	L	S	G	V	P	E	G	D	V	P	G	L	V	K	G	N	T	Y	L	T	P	Q	Q	Q	T	A	E	L	T	G	P	V	N	K	A	I
Query Conservation														.																												.	.
Alig confidence														.																												.	.																			.	.
Template Conservation																																																														.	.
Template Sequence		W	R	S	L	P	K	P	L	Q	E	R	F	I	A	A	V	H	E	Y	S	W	I	H	Y	A	G	I	Q	K	A	N	L	E	A	W	P	K	Y	R	Q	A	G	V	E	V	I	R	L	S	N	E	D	V	R	K	F	R	R	L	A	.	.	I	P	I	W	F	K	W	A	K	M	D	K	Y	S	R	E	A	F
Template Known Secondary structure					S																																					T	T																			.	.									T	T	S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		3261	.	.	.	.	.	.	.	.	3270	.	.	.	.	.	.	.	.	.	3280	.	.	.	.	.	.	.	.	.	3290	.	.	.	.	.	.	.	.	.	3300	.	.	.	.	.	.	.	.	.	3310	.	.	.	.	.	.	.	.	.	3320			.	.	.	.	.	.	.	.	.	3330	.	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	T	A	Q	F	L	K	E	Q	G	K	V	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	Q	L	E	Y	M	K	G	I	G	Y	V	T	D
Template Known Secondary structure											T	T	S	S		T
Template Predicted Secondary structure
Template SS confidence
		3339	3340	.	.	.	.	.	.	.	.	.	3350	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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