Job Description Q47537 Confidence 57.31% Date Thu Jan 5 12:36:50 GMT 2012 Rank 177 Aligned Residues 71 % Identity 21% Template c2z8fB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure									.															.									.															.	.	.	.	.											.
Query SS confidence									.															.									.															.	.	.	.	.											.
Query Sequence		Q	A	V	N	V	T	V	.	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	.	D	N	T	F	A	K	E	S	.	G	A	T	V	D	W	R	K	F	D	S	G	A	S	.	.	.	.	.	I	V	R	A	L	A	S	G	D	V	.	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V
Query Conservation									.															.									.															.	.	.	.	.											.
Alig confidence									.															.									.															.	.	.	.	.											.
Template Conservation
Template Sequence		G	V	V	N	I	T	Y	M	H	R	L	P	D	S	E	G	M	T	L	V	N	D	I	V	A	K	W	N	K	Q	H	P	D	I	Q	V	K	A	T	K	F	D	G	K	A	S	D	M	I	K	K	L	E	T	D	V	K	S	G	E	A	P	D	L	A	Q	V	G	Y	A	E	L	P	E	V	F	T	K	G	L
Template Known Secondary structure		S														T	T	S															T	T									S	S		G	G	G												T				S						T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions