Job Description Q47537 Confidence 98.13% Date Thu Jan 5 12:36:50 GMT 2012 Rank 54 Aligned Residues 213 % Identity 13% Template c2ylnA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation Resolution 1.12 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.											.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	.	.	.	.	.	.	.	.	.	.	K	V	A	Q	A	.	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q
Query Conservation																	.	.	.	.	.	.	.	.	.	.						.
Alig confidence																	.	.	.	.	.	.	.	.	.	.						.																		.
Template Conservation																																																		.
Template Sequence		K	G	T	V	T	V	G	T	E	G	T	Y	A	P	F	T	Y	H	D	K	D	G	K	L	T	G	Y	D	V	E	V	T	R	A	V	A	E	K	L	G	V	K	V	E	F	K	E	T	.	Q	W	D	S	M	M	A	G	L	K	A	G	R	F	D	V	V	A	N	Q	V	G	L	T	S	P	E	R	Q	A	T
Template Known Secondary structure		T									S			T	T	T					T	T	S				S														T									.		G	G	G								T	S		S				S	S					S
Template Predicted Secondary structure																																																		.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I
Query Conservation
Alig confidence							.	.																																											.	.	.	.	.	.	.	.
Template Conservation							.	.																																											.	.	.	.	.	.	.	.
Template Sequence		F	D	K	S	E	.	.	P	Y	S	W	S	G	A	V	L	V	A	H	N	D	S	N	I	K	S	I	A	D	I	K	G	V	K	T	A	Q	S	L	T	S	N	Y	G	E	K	A	K	A	.	.	.	.	.	.	.	.	A	G	A	Q	L	V	P	V	D	G	L	A	Q	S	L	T	L	I	E	Q	K	R	A
Template Known Secondary structure						S	.	.		S											T	T		S			S	G	G	G		T	T	S						T	T	S									.	.	.	.	.	.	.	.	T	T							S	S										T	T	S
Template Predicted Secondary structure							.	.																																											.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.									.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S
Query Conservation
Alig confidence																																												.	.	.					.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																																												.	.	.					.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		D	A	T	L	N	D	E	L	A	V	L	D	Y	L	K	K	N	P	N	A	G	V	K	I	V	W	S	A	P	A	D	E	K	V	G	S	G	L	I	V	N	K	.	.	.	G	N	D	E	.	.	.	.	A	V	A	K	F	S	T	A	I	N	E	L	K	A	D	G	.	.	.	.	.	.	.	T	L	K	K
Template Known Secondary structure																		S	T	T	S	S									G	G	G										S	.	.	.	S				.	.	.	.															T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.					.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.								.	260	.	.
		251	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	R	L	S	G	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	E	Q	F	F	G	K	D
Template Known Secondary structure								S	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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