Job Description Q47537 Confidence 97.96% Date Thu Jan 5 12:36:50 GMT 2012 Rank 64 Aligned Residues 213 % Identity 14% Template c2y7iB_ PDB info PDB header:arginine-binding protein Chain: B: PDB Molecule:stm4351; PDBTitle: structural basis for high arginine specificity in salmonella2 typhimurium periplasmic binding protein stm4351. Resolution 1.90 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.											.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	.	.	.	.	.	.	.	.	.	.	K	V	A	Q	A	.	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q
Query Conservation																	.	.	.	.	.	.	.	.	.	.						.
Alig confidence																	.	.	.	.	.	.	.	.	.	.						.																		.																														.	.
Template Conservation																																																		.																														.	.
Template Sequence		A	R	T	L	H	F	G	T	S	A	T	Y	A	P	Y	E	F	V	D	A	D	N	K	I	V	G	F	D	I	D	V	A	N	A	V	C	K	E	M	Q	A	E	C	S	F	T	N	Q	.	S	F	D	S	L	I	P	S	L	R	F	K	K	F	D	A	V	I	A	G	M	D	M	T	P	K	R	E	Q	.	.
Template Known Secondary structure													B	T	T	T	B				T	T	S				S													T	T									.		G	G	G							T	T	S		S				S	S		B							T	.	.
Template Predicted Secondary structure																																																		.																														.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I
Query Conservation
Alig confidence		.																																																		.	.	.	.	.	.
Template Conservation		.																																																		.	.	.	.	.	.
Template Sequence		.	Q	V	S	F	S	Q	P	Y	Y	E	G	L	S	A	V	V	V	T	R	K	G	A	Y	H	T	F	A	D	L	K	G	K	K	V	G	L	E	N	G	T	T	H	Q	R	Y	L	Q	D	K	.	.	.	.	.	.	Q	Q	A	I	T	P	V	A	Y	D	S	Y	L	N	A	F	T	D	L	K	N	N	R	L
Template Known Secondary structure		.	T	S				S		S	B											T	T	T			S	G	G	G	G	T	T							T	T	S										.	.	.	.	.	.		T	T	S						S											T	T	S
Template Predicted Secondary structure		.																																																		.	.	.	.	.	.
Template SS confidence
			99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S
Query Conservation
Alig confidence																																												.	.						.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																																												.	.						.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		E	G	V	F	G	D	V	A	A	I	G	K	W	L	K	N	N	P	D	Y	A	I	M	D	E	R	A	S	D	P	D	Y	Y	G	K	G	L	G	I	A	V	R	.	.	K	D	N	D	A	.	.	.	.	L	L	Q	E	I	N	A	A	L	D	K	V	K	A	S	P	.	.	.	.	.	.	.	E	Y	A	Q
Template Known Secondary structure		S														T	T		T	T					S	S		B			T	T	T	S		S		B						.	.	T	T				.	.	.	.														T	S		.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.						.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.								.	.	.	.
		251	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	R	L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	E	K	W	F	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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