Job Description Q47537 Confidence 85.94% Date Thu Jan 5 12:36:50 GMT 2012 Rank 145 Aligned Residues 201 % Identity 14% Template c2v84A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum Resolution 1.78 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																																					.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	.	.	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.																			.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																														.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.
Template Sequence		D	V	L	Y	L	Y	N	W	T	Y	Y	T	P	T	S	L	I	K	K	.	.	.	F	E	Q	Q	Y	N	V	Q	V	V	Y	D	D	Y	A	S	N	E	D	M	F	A	K	L	S	I	G	A	S	G	Y	D	L	V	V	P	S	G	D	F	V	S	I	M	K	R	K	H	L	L	E	K	I	D	L	S	K	I
Template Known Secondary structure										T	T	T	S								.	.	.						T									S										S	S	S			S		S					B										T	T							G	G	G
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																				92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.										.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.										.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	.	.	.	K	T	I	S	K	P	E	D	L	.	.	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.										.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.										.	.
Template Conservation
Template Sequence		P	N	V	Q	F	I	K	E	S	V	R	A	R	I	A	Y	D	P	K	M	E	Y	S	V	P	Y	Y	L	G	A	A	G	I	A	V	N	K	K	A	V	P	S	Y	A	R	T	W	S	I	F	S	R	K	D	L	A	Y	R	M	S	M	M	D	D	M	R	E	V	M	G	A	A	L	A	S	L	G	Y	N	V
Template Known Secondary structure		G	G	G	G	G	B									T	T	S	T	T		S	S															T	T	T			S			S	S	G	G	G	G	G		G	G	G	T	T	S					S													T	T			T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		149	150	.																			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	K	N	E	Q	E	L	A	Q	A	A	I	L	V	T	D	H	W	K	P	N	L	V	K	F	D	S	D	G	Y	A	K	S	F	A	S	G	D	F	V	V	A	H	G	F	A	E	A	F	F	A	E	T	P	E	A	M	H	E	H	I	D	F	F	I	P	Q	D	V	A	S	P	V	Y	V	D	S	F	C
Template Known Secondary structure		T																		T	G	G	G						S	S	S								T	S		S													S		G	G	G	G	G	G							T	T	T	T									B
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	K	G	A	R	N	R	D	L	A	H	A	F	I	N
Template Known Secondary structure				T	T		S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions