Job Description Q47537 Confidence 97.72% Date Thu Jan 5 12:36:50 GMT 2012 Rank 81 Aligned Residues 192 % Identity 10% Template c2rc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution Resolution 1.96 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60											.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.																																																						.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.																																																						.
Query Sequence		F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	.	.	.	.	.	.	.	.	.	.	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	.
Query Conservation																		.	.	.	.	.	.	.	.	.	.																																																						.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																										.										.	.																	.
Template Conservation																																																					.										.	.
Template Sequence		L	A	E	D	M	N	F	D	F	D	L	Y	I	V	G	D	G	K	Y	G	A	W	K	N	G	H	W	T	G	L	V	G	D	L	L	S	G	T	A	N	M	A	V	T	S	F	S	I	N	T	A	.	R	S	Q	V	I	D	F	T	S	.	.	P	F	F	S	T	S	L	G	I	L	V	R	T	R	G	T	E
Template Known Secondary structure							T									T	T								T	T												T	S		S				S	S		B					.			T	T	S				S	.	.		S											T	T	S
Template Predicted Secondary structure																																																					.										.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
								114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																										.	.
Query SS confidence		.	.	.	.	.	.																																																										.	.
Query Sequence		.	.	.	.	.	.	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	.	.	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K
Query Conservation		.	.	.	.	.	.																																																										.	.
Alig confidence		.	.	.	.	.	.																																										.	.															.	.
Template Conservation																																																	.	.
Template Sequence		L	S	G	I	H	D	P	K	L	H	H	P	S	Q	G	F	R	F	G	T	V	R	E	S	S	A	E	D	Y	V	R	Q	S	F	P	E	M	H	E	Y	M	R	R	Y	N	V	P	.	.	A	T	P	D	G	V	Q	Y	L	K	N	D	P	E	K	L	D	A	F	I	M	D	K	A	L	L	D	Y	E	V	S
Template Known Secondary structure				S	T	T						S			T	T						B	T	T	S																		G	G	G		B	S	.	.	S										S	S	S				S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S	K	L	A	R	L	S	G	V
Query Conservation
Alig confidence																									.	.	.	.	.						.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.						.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		I	D	A	D	C	K	L	L	T	V	G	K	P	F	A	I	E	G	Y	G	I	G	L	.	.	.	.	.	P	P	N	S	P	.	.	.	.	.	L	T	S	N	I	S	E	L	I	S	Q	Y	K	S	H	G	.	.	.	.	.	.	.	F	M	D	V	L	H	D	K	W	Y	K	V
Template Known Secondary structure				S	S							S													.	.	.	.	.		T	T		T	.	.	.	.	.	T														T	T	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure																									.	.	.	.	.						.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.						.	.	.	260	.						.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.								.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions