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Job DescriptionQ47537
Confidence95.38%DateThu Jan 5 12:36:50 GMT 2012
Rank117Aligned Residues180
% Identity16%Templatec2qryD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60........ .70.........80.........90...... ...100..
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Query Sequence  FAKESGATVDWRKFDSGASIVRAL. . . . ASGDVQIGNLGSSPLAVAASQQVPIEVF. . . . . . . . . . . . . . . . . . LLASKL
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Template Sequence  FEADCNCELKLVALEDGVSLLNRLRXEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYG
Template Known Secondary structure  SS
S
S
GGG


SGGGTTT
B





TTS


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SS
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   44.....50.........60.........70.........80.........90.........100.........110.........120...
 
   103......110. ........120 ....... ..130.........140........ .150.........160....
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Query Sequence  GNSEALVVK. . . KTISKPEDL. . . . . IGKRIAV. PFISTTHYSLLAALKHWGIKP. . . . . . . . . GQVEIVNLQPPAIIAA
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Template Sequence  YFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWXQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGL
Template Known Secondary structure  TTT
SS

SS
SS



TTT
GGGTTSS
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   124.....130.........140.........150.........160.........170.........180.........190.........200...
 
   165....170.........180. ........190.........200.........210.........220......
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Query Sequence  WQRGDIDGAYVWAPAVN. ALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAK
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Template Sequence  FLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAA. . SKQPELAQKFLQ
Template Known Secondary structure  TTS
STT






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   204.....210.........220.........230.........240.........250.. .......260....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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