Job Description Q47537 Confidence 95.55% Date Thu Jan 5 12:36:50 GMT 2012 Rank 116 Aligned Residues 193 % Identity 12% Template c2ql3G_ PDB info PDB header:transcription Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein; PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1 Resolution 2.05 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	.	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S
Query Conservation																														.
Alig confidence																														.												.																						.	.	.	.	.	.	.
Template Conservation																																										.																						.	.	.	.	.	.	.
Template Sequence		A	G	P	I	A	V	G	C	Y	P	A	L	G	P	T	I	L	P	S	X	L	Y	A	F	T	A	E	Y	P	R	A	S	V	E	F	R	E	D	T	Q	.	N	R	L	R	T	Q	L	E	G	G	E	L	D	V	A	I	V	Y	D	L	D	.	.	.	.	.	.	.	L	S	P	E	W	Q	T	V	P	L	X
Template Known Secondary structure											G	G	G	T	T	T	T													T	T											.										T	S		S						S	S	S	.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure																																										.																						.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160								.	.	.	.	.	.	.	.	.	170	.
		101	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.
Query Sequence		K	L	G	N	S	E	A	L	V	V	K	K	T	.	.	.	.	.	.	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y
Query Conservation															.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																																						.	.
Template Conservation																																																										.	.
Template Sequence		T	R	E	P	X	V	V	L	G	A	E	H	P	L	A	G	V	D	G	P	V	R	L	A	D	L	A	E	H	P	X	V	L	L	D	A	P	P	S	T	N	H	A	X	D	V	C	R	E	A	G	F	A	P	R	V	.	.	A	Y	R	T	A	N	F	E	T	A	R	A	F	V	G	R	G	L	G	W	T	L
Template Known Secondary structure											T	T	S	T	T	T	T	S		S		B		G	G	G	G	T	T	S								T	T												T	T						.	.					S												T	S		B
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K
Query Conservation
Alig confidence																																								.	.
Template Conservation																																								.	.
Template Sequence		L	L	Q	R	P	R	V	D	V	T	Y	E	G	L	P	V	V	V	K	P	I	A	E	P	K	P	A	S	V	A	V	V	V	A	W	H	Q	E	.	.	A	T	L	S	R	V	A	R	A	F	I	R
Template Known Secondary structure			S				S	S		B		T	T	S		B						B		S	S													T	T	.	.
Template Predicted Secondary structure																																								.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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