Job Description Q47537 Confidence 98.49% Date Thu Jan 5 12:36:50 GMT 2012 Rank 48 Aligned Residues 222 % Identity 14% Template c2q2aD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus Resolution 1.79 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.										.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.						.
Query SS confidence																									.	.	.	.	.	.	.	.	.						.
Query Sequence		A	F	I	A	F	Q	A	Q	A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	.	.	.	.	.	.	.	.	.	K	V	A	Q	A	.	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L
Query Conservation																									.	.	.	.	.	.	.	.	.						.
Alig confidence																									.	.	.	.	.	.	.	.	.						.																		.
Template Conservation																																																									.
Template Sequence		S	G	G	D	G	G	A	T	K	K	K	V	V	V	G	T	D	A	A	F	A	P	F	E	Y	M	Q	K	G	K	I	V	G	F	D	V	D	L	L	D	A	V	M	K	A	A	G	L	D	Y	E	L	K	N	I	.	G	W	D	P	L	F	A	S	L	Q	S	K	E	V	D	M	G	I	S	G	I	T	I	T
Template Known Secondary structure		T	T	S		T	T	S	S												B	T	T	T	B				T	T				S													T	T									.												T	S	S					S	S		B
Template Predicted Secondary structure																																																									.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	.	Q	P	P	A	I	I
Query Conservation																																																																											.
Alig confidence							.	.	.																																																		.	.	.	.	.	.											.
Template Conservation							.	.	.																																																		.	.	.	.	.	.
Template Sequence		D	E	R	K	Q	.	.	.	S	Y	D	F	S	D	P	Y	F	E	A	T	Q	V	I	L	V	K	Q	G	S	P	V	K	N	A	L	D	L	K	G	K	T	I	G	V	Q	N	A	T	T	G	Q	E	A	A	E	K	L	.	.	.	.	.	.	F	G	K	G	P	H	I	K	K	F	E	T	T	V	V	A	I
Template Known Secondary structure						T	.	.	.	T					S													T	T					S	G	G	G	G	T	T	S						T	T	S										.	.	.	.	.	.			S	S	T	T					S	S
Template Predicted Secondary structure							.	.	.																																																		.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W
Query Conservation
Alig confidence																																																				.	.	.	.				.	.	.	.																	.	.	.
Template Conservation																																																				.	.	.	.				.	.	.	.																	.	.	.
Template Sequence		M	E	L	L	N	G	G	V	D	A	V	I	T	D	N	A	V	A	N	E	Y	V	K	N	N	P	N	K	K	L	Q	V	I	E	D	P	K	N	F	A	S	E	Y	Y	G	M	I	F	P	K	.	.	.	.	N	S	E	.	.	.	.	L	K	A	K	V	D	E	A	L	K	N	V	I	N	S	G	.	.	.
Template Known Secondary structure						T	T	S	S	S																	G	G	G								T	T	T	S											T	.	.	.	.	T		T	.	.	.	.																T	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.				.	.	.	.																	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Q	P	E	N	I	S	K	L	A	R	L	S	G	V	P	E
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	K	Y	T	E	I	Y	K	K	W	F	G	K	E	P
Template Known Secondary structure		.	.	.	.											S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						231	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions