Job Description Q47537 Confidence 99.18% Date Thu Jan 5 12:36:50 GMT 2012 Rank 32 Aligned Residues 210 % Identity 17% Template c2pfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.80 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.											.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.											.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	.	.	.	.	.	.	G	A	T	V	D	W	R	K	F	D	.	.	.	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.											.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.						.	.	.	.	.	.											.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		T	K	W	D	L	P	T	A	Y	P	A	S	N	L	H	V	E	N	L	T	Q	.	F	V	K	D	V	D	S	L	S	G	G	K	L	K	I	T	L	H	N	N	A	S	L	Y	K	A	P	E	I	K	R	A	V	Q	G	N	Q	A	Q	I	G	E	I	L	L	T	N	F	A	N	E	D	P	V	Y	E	L	D
Template Known Secondary structure									S	S		T	T	S									.										T	T	S								T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		G	G	G	T	G	G
Template Predicted Secondary structure																							.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																			79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.																					.	.	.	.	.
Template Conservation																																																	.	.																					.	.	.	.	.
Template Sequence		G	L	P	F	L	A	T	G	Y	D	A	S	F	K	L	Y	Q	A	Q	K	P	F	L	E	K	K	L	A	S	Q	G	M	M	L	L	Y	S	V	A	W	P	P	Q	G	I	F	A	.	.	N	R	D	I	K	Q	V	S	D	M	K	G	L	K	W	R	A	Y	S	P	.	.	.	.	.	V	T	A	K	I	A
Template Known Secondary structure		G	S	T	T	S			S																					T	T	T																	.	.	S	S			S	S	G	G	G	G	T	T						S	S		.	.	.	.	.
Template Predicted Secondary structure																																																	.	.																					.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	.	H	P	E	V
Query Conservation																																																																													.
Alig confidence									.	.	.	.	.																																															.	.	.															.
Template Conservation									.	.	.	.	.																																															.	.	.
Template Sequence		E	L	V	G	A	Q	P	.	.	.	.	.	V	T	V	Q	Q	A	E	L	A	Q	A	M	A	T	G	V	I	D	S	Y	M	S	S	G	S	T	G	F	D	T	K	T	Y	E	Y	I	K	K	F	Y	D	T	E	A	W	L	.	.	.	P	K	N	A	V	L	V	N	K	K	A	F	D	A	L	D	P	A	T
Template Known Secondary structure					T				.	.	.	.	.					G	G	G							T	T	S		S												T	T	G	G	G	T												.	.	.														T	S
Template Predicted Secondary structure									.	.	.	.	.																																															.	.	.
Template SS confidence
		154	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	A	L	K	K	A	G	A	Q	A	E	E	R	G	W	K	L	S	Q	E	K	N	S	W	Y	K	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions