Job Description Q47537 Confidence 97.75% Date Thu Jan 5 12:36:50 GMT 2012 Rank 78 Aligned Residues 210 % Identity 14% Template c2o1mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 Resolution 2.00 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.											.	.	.	40	.		.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.						.									.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.						.									.
Query Sequence		A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	.	.	.	.	.	.	.	.	.	.	K	V	A	Q	A	.	D	N	T	F	A	K	E	S	.	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q
Query Conservation																	.	.	.	.	.	.	.	.	.	.						.									.
Alig confidence																	.	.	.	.	.	.	.	.	.	.						.									.										.
Template Conservation																																																			.
Template Sequence		V	Q	T	I	T	V	G	T	G	T	Q	F	P	N	I	C	F	I	D	E	K	G	D	L	T	G	Y	D	V	E	L	I	K	E	L	D	K	R	L	P	H	Y	K	F	T	F	K	T	X	.	E	F	S	N	L	L	V	S	L	G	Q	H	K	V	D	I	V	A	H	Q	X	E	K	S	K	E	R	E	K	K
Template Known Secondary structure											S			T	T	T					T	T	S				S														T	T									.		G	G	G						G	G	G	S		S				S
Template Predicted Secondary structure																																																			.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D
Query Conservation
Alig confidence									.																																												.	.	.	.	.	.	.
Template Conservation									.																																												.	.	.	.	.	.	.
Template Sequence		F	L	F	N	K	V	A	.	Y	N	H	F	P	L	K	I	T	V	L	Q	N	N	D	T	I	R	G	I	E	D	L	K	G	K	R	V	I	T	S	A	G	A	L	V	L	K	K	W	N	E	D	.	.	.	.	.	.	.	N	G	R	P	F	E	I	A	Y	E	A	N	E	T	A	N	Q	L	K	S	G	R
Template Known Secondary structure						S	S		.												T	T			S		S	S	G	G	G		T	T																	T	T	.	.	.	.	.	.	.	T	T			S																S	S
Template Predicted Secondary structure									.																																												.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.								.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I
Query Conservation
Alig confidence																																								.	.	.	.	.	.							.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.							.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		A	D	A	T	I	S	T	P	F	A	V	D	F	Q	N	K	T	S	T	I	K	E	K	T	V	G	N	V	L	S	N	A	K	V	Y	F	X	F	.	.	.	.	.	.	N	K	N	E	Q	T	.	.	.	.	L	S	D	D	I	D	K	A	L	Q	E	I	I	D	D	G	.	.	.	.	.	.	.	T	L	K
Template Known Secondary structure			S																	S	S																			.	.	.	.	.	.		G	G	G			.	.	.	.															T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.							.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.							210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.								.	.	.
		250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	L	A	R	L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	S	L	K	W	L	G
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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