Job Description Q47537 Confidence 100.00% Date Thu Jan 5 12:36:50 GMT 2012 Rank 11 Aligned Residues 286 % Identity 18% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																									.												.																					.	.	.	.															.	.	.	.	.	.
Query SS confidence																									.												.																					.	.	.	.															.	.	.	.	.	.
Query Sequence		Q	A	Q	A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	.	D	N	T	F	A	K	E	S	G	A	T	.	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	.	.	.	.	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	.	.	.	.	.	.
Query Conservation																									.												.																					.	.	.	.															.	.	.	.	.	.
Alig confidence																									.												.																					.	.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		M	P	E	T	A	N	I	K	L	G	Y	I	P	I	V	E	A	A	P	L	I	I	A	Q	E	K	G	F	F	A	K	Y	G	M	T	G	V	E	V	S	K	Q	A	N	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	G	G	Q	W	Q	M	P	M	P	H	L	I	T	E	G	I	I	T
Template Known Secondary structure		S		S		S								S	S	G	G	G									T	T					T	T		T								S	S												T	T	T	T	S		S						T	T							T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.															110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.					.																					.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.					.																					.
Query Sequence		A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	K	T	I	S	K	P	E	D	L	I	G	K	.	.	R	I	A	V	.	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	.	P
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.					.																					.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.					.																					.
Template Conservation
Template Sequence		N	G	N	K	V	P	M	Y	V	L	A	Q	L	I	T	Q	G	N	G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T	N	G	R	K	F	K	A	A	H	T	F	P	N	V	N	Q	D	F	W	I	R	Y	W	F	A	A	G	G	V	D	P	D
Template Known Secondary structure		T	T													B									G	G	G	T	T	T	T		S	S			G	G	G						T						S	S							S	S	T	T	S													T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	I	D	L	L	A	V	P	P	A	E	T	V	Q	G	M	R	N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	G	Y	M	A	G	L	T	A	Q	I	W	P	Y	H	P	E	E	Y	L	A	I	R	A	D	W	V	D	K	N	P	K	A	T	K	A	L	L	K	G	I
Template Known Secondary structure		T	T	S																	T									T	T								T	T	S											S	T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		229	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270																		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.																	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	A	Q	Q	P	Y	I	A	.	.	N	P	D	V	W	L	K	Q	P	E	N	I	S	K	L	A	.	.	R	L	S	G	V	P	E	G	D	V	P	G	L	V	K	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	L	T	P	Q	Q	Q	T	A	E	L	T	G	P	V	N
Query Conservation											.	.																	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.				.	.	.	.	.	.								.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		M	E	A	Q	Q	W	I	D	D	P	K	N	R	P	.	.	.	.	.	.	E	V	V	Q	I	V	S	G	R	N	Y	F	N	V	P	T	T	I	L	E	S	P	F	K	G	Q	Y	T	M	G	D	G	Q	P	A	I	D	D	F	Q	K	G	P	L	Y	W	K	D	G	I	G	N	V	S	Y	P	Y	K	S	H
Template Known Secondary structure										S	G	G	G			.	.	.	.	.	.								S	T	T	T	T		S		T					T	G	G	G	T					B	T	T	B						G	G	G	S		B	S	S	B		S	S	S	B	S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.							.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	I	D	T	A	Q	F	L	K	E	Q	G	K	V	P	A	V	A	N	D	Y	S	Q
Query Conservation
Alig confidence									.	.
Template Conservation									.	.
Template Sequence		D	L	W	F	L	T	E	.	.	S	I	R	W	G	F	H	K	N	A	I	P	D	L	D	T
Template Known Secondary structure									.	.				T	T	T	T	T	T	T	S		S
Template Predicted Secondary structure									.	.
Template SS confidence
		369	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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