Job Description Q47537 Confidence 99.09% Date Thu Jan 5 12:36:50 GMT 2012 Rank 34 Aligned Residues 269 % Identity 13% Template c2hzkB_ PDB info PDB header:ligand binding, transport protein Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.											.	.	.																											.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.											.	.	.																											.	.	.	.	.	.
Query Sequence		Q	A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	.	.	.	.	.	.	G	A	T	V	D	W	R	K	F	D	.	.	.	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	.	.	.	.	.	.
Query Conservation																															.	.	.	.	.	.											.	.	.																											.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.											.	.	.																											.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	V	T	W	R	L	A	S	S	F	P	K	S	L	D	T	I	F	G	G	A	E	V	L	S	K	X	L	S	E	A	T	D	G	N	F	Q	I	Q	V	F	S	A	G	E	L	V	P	G	L	Q	A	A	D	A	V	T	E	G	T	V	E	C	C	H	T	V	G	Y	Y	Y	W	G	K	D	P	T	F	A
Template Known Secondary structure											S	S		T	T	S																	T	T	T	T									T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		T
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
																														86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																					.	.	.	.	.	.
Template Conservation																																																					.																					.	.	.	.	.	.
Template Sequence		L	A	A	A	V	P	F	S	L	S	A	R	G	I	N	A	W	H	Y	H	G	G	G	I	D	L	Y	N	E	F	L	S	Q	H	N	I	V	A	F	P	G	G	N	T	G	V	Q	X	G	G	W	.	F	R	R	E	I	N	T	V	A	D	X	Q	G	L	K	X	R	V	G	G	.	.	.	.	.	.	F	A
Template Known Secondary structure			T	T			T	T														S	S										G	G	G	T											S	B					.		S	S				S	S	G	G	G	T	T								.	.	.	.	.	.
Template Predicted Secondary structure																																																					.																					.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H
Query Conservation
Alig confidence													.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		G	K	V	X	E	R	L	G	V	V	P	.	.	.	.	.	Q	Q	I	A	G	G	D	I	Y	P	A	L	E	K	G	T	I	D	A	T	E	W	V	G	P	Y	D	D	E	K	L	G	F	F	K	V	A	P	Y	Y	Y	Y	P	G	W	W	E	G	G	P	T	V	H	F	X	F	N	K	S	A	Y	E	G	L
Template Known Secondary structure							T	T	T				.	.	.	.	.					G	G	G								T	S		S												T	T	T	G	G	G	T								B	T	T		S	S															S
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.																								.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	V	V	K	A	F	A	.	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	V	W	L	K	Q	P	E	N	I	S	K	L	A	R	L	S	G	V	P	E	G	D	V	P	G	L	V	K	G	N	T	Y	L
Query Conservation										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																																																																																	.
Template Sequence		T	P	T	Y	Q	S	L	L	R	T	A	C	H	A	A	D	A	N	X	L	Q	L	Y	D	W	K	N	P	T	A	I	K	S	L	V	A	Q	G	T	Q	L	R	P	F	S	P	E	I	L	Q	A	C	F	E	A	A	N	E	V	Y	A	E	X	E	A	S	N	P	A	F	K	K	I	W	D	S	I	K	A	.
Template Known Secondary structure																																						T	T																																										.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	Q	Q	Q	T	A	E	L	T	G	P	V	N	K	A	I	I	D	T	A	Q	F	L	K	E	Q	G	K	V
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	F	R	S	E	H	Y	T	W	A	Q	I	A	E	Y	N	Y	D	T	F	X	X	V	Q	Q	N	A	G	K	L
Template Known Secondary structure		.									T	T	T															T	T
Template Predicted Secondary structure		.
Template SS confidence
			337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions