Job Description Q47537 Confidence 92.27% Date Thu Jan 5 12:36:50 GMT 2012 Rank 134 Aligned Residues 190 % Identity 16% Template c2hxrA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator cynr; PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	D	N	T	F	A	K	E	S	.	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L
Query Conservation																												.
Alig confidence																												.												.																					.	.	.	.	.	.	.
Template Conservation																																								.																					.	.	.	.	.	.	.
Template Sequence		S	L	R	I	A	V	T	P	T	F	T	S	Y	F	I	G	P	L	X	A	D	F	Y	A	R	Y	P	S	I	T	L	Q	L	Q	E	X	S	Q	.	E	K	I	E	D	X	L	C	R	D	E	L	D	V	G	I	A	F	A	P	.	.	.	.	.	.	.	V	H	S	P	E	L	E	A	I	P	L	L	T	E
Template Known Secondary structure													T	T	T													T	T	S										.									T	T	S		S						S	S	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure																																								.																					.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.	160	.	.	.
		103	.	.	.	.	.	.						110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.																			.
Query SS confidence									.	.	.	.	.																			.
Query Sequence		G	N	S	E	A	L	V	.	.	.	.	.	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	.	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W
Query Conservation									.	.	.	.	.																			.
Alig confidence									.	.	.	.	.																			.																						.																										.	.
Template Conservation																																																						.																										.	.
Template Sequence		S	L	A	L	V	V	A	Q	H	H	P	L	A	V	H	E	Q	V	A	L	S	R	L	H	D	E	K	L	V	L	L	S	A	E	F	A	T	R	E	Q	I	D	H	Y	C	E	K	A	G	L	H	P	.	Q	V	V	I	E	A	N	S	I	S	A	V	L	E	L	I	R	R	T	S	L	S	T	L	L	.	.
Template Known Secondary structure									T	T	S	G	G	G	G		S				G	G	G	G	G	G								T	T	S													T	T				.							S												S	S		B				.	.
Template Predicted Secondary structure																																																						.																										.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D
Query Conservation
Alig confidence		.											.	.	.																							.	.
Template Conservation		.											.	.	.																							.	.
Template Sequence		.	P	A	A	I	A	T	Q	H	D	G	.	.	.	L	K	A	I	S	L	A	P	P	L	L	E	R	T	A	V	L	L	R	R	K	N	.	.	S	W	Q	T	A	A	A	K	A	F	L	H	X	A	L	D
Template Known Secondary structure		.		T							T	T	.	.	.							S	S		S											T	T	.	.	S
Template Predicted Secondary structure		.											.	.	.																							.	.
Template SS confidence
			241	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions