Job Description Q47537 Confidence 99.03% Date Thu Jan 5 12:36:50 GMT 2012 Rank 40 Aligned Residues 222 % Identity 21% Template c2hpgB_ PDB info PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein Resolution 1.90 Å

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		20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.						.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure											.														.	.																					.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence											.														.	.																					.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	A	V	N	V	T	V	A	.	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	.	.	D	N	T	F	A	K	E	S	G	A	T	V	D	W	R	K	F	D	S	G	.	.	.	.	.	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	.	.	.	.	.	.	.	.	.
Query Conservation											.														.	.																					.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence											.														.	.																					.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	K	Y	T	L	R	F	G	H	V	L	A	P	G	E	P	Y	H	Q	A	F	L	K	W	A	K	A	V	E	E	K	T	N	G	D	V	R	I	E	V	F	P	S	S	Q	L	G	V	E	E	D	I	I	E	Q	I	R	X	G	A	P	V	G	W	N	T	D	S	A	R	L	G	X	Y	V	K	D	I	G
Template Known Secondary structure				S											T	T	S	T																T	T	T	S											T	T	T										T	T		S											T	T	T	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
																																				83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																																			.
Template Sequence		V	X	N	L	A	Y	F	I	D	F	X	G	A	K	T	P	E	E	A	I	E	V	L	K	K	I	K	Q	S	P	T	X	Q	K	W	L	K	E	L	E	Q	R	F	G	I	K	V	L	S	.	F	Y	W	V	Q	G	Y	R	H	F	V	T	N	K	P	I	R	K	P	E	D	L	N	G	L	R	I	R	T	P
Template Known Secondary structure		G	G	G	S	T	T					T	T			S														S																					.													S	S				S	G	G	G	G	T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.																																																			.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.																																																			.	.	.
Template Sequence		G	A	P	A	W	Q	E	S	I	R	S	L	.	.	.	.	.	.	.	.	.	G	A	I	P	V	A	V	N	F	G	E	I	Y	T	A	V	Q	T	R	A	V	D	G	A	E	L	T	Y	A	N	V	Y	N	G	G	L	Y	E	V	L	K	Y	X	S	E	T	G	H	F	L	.	.	.	L	I	N	F	E	I
Template Known Secondary structure		S	S											.	.	.	.	.	.	.	.	.	T								G	G	G							T	T	S		S												T	T	G	G	G	T												.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.																																																			.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.										.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q	Q	P	Y	I	A	N	P	D	V	W	L	K	Q	P	E	N	I	S	K	L	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	A	D	W	F	N	S	L	P	K	E	Y	Q	K	I	I	E	E	E	X	D	K	A	G	I	E	V	S	L	K	I	X	K	E	L	E	E	E	Y	K	Q	K	C	I	E
Template Known Secondary structure										S																										T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions