Job Description Q47537 Confidence 100.00% Date Thu Jan 5 12:36:50 GMT 2012 Rank 10 Aligned Residues 292 % Identity 17% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																										.											.																			.	.	.	.																			.	.	.	.
Query SS confidence																										.											.																			.	.	.	.																			.	.	.	.
Query Sequence		F	Q	A	Q	A	V	N	V	T	V	A	Y	Q	T	S	A	E	P	A	K	V	A	Q	A	.	D	N	T	F	A	K	E	S	G	A	.	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	.	.	.	.	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	.	.	.	.
Query Conservation																										.											.																			.	.	.	.																			.	.	.	.
Alig confidence																										.											.																			.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		N	A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G	T	V
Template Known Secondary structure					S		S								S	S	G	G	G									T	T					T	T		T	T							S													G	G	G	T	S		S						T										T	T
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
				88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110												.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.
Predicted Secondary structure		.	.																								.	.	.	.	.	.	.	.	.	.	.																		.																							.
Query SS confidence		.	.																								.	.	.	.	.	.	.	.	.	.	.																		.																							.
Query Sequence		.	.	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	.	.	.	.	.	.	.	.	.	.	.	K	K	T	I	S	K	P	E	D	L	I	G	K	R	I	A	V	.	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	.	Q	V	E
Query Conservation		.	.																								.	.	.	.	.	.	.	.	.	.	.																		.																							.
Alig confidence		.	.																								.	.	.	.	.	.	.	.	.	.	.																		.																							.
Template Conservation
Template Sequence		T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	P	G	K	D	F	S
Template Known Secondary structure		S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T	T	S													T	T			B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A	P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q
Template Known Secondary structure							G	G	G							T	T	S		S						T	T									T	S							G	G	G	T	B	T	T		B
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		233	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.															.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure							.	.																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	Y	I	A	.	.	N	P	D	V	W	L	K	Q	P	E	N	I	S	K	L	A	.	.	R	L	S	G	V	P	E	G	D	V	P	G	L	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	T	Y	L	T	P	Q	Q	Q	T	A	E	L	T	G	P	V	N	K	A	I	I	D	T	A
Query Conservation							.	.																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.				.	.	.	.	.	.								.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation												.	.	.	.	.	.																																																													.	.
Template Sequence		Q	W	C	D	Q	A	E	N	K	E	.	.	.	.	.	.	E	M	C	Q	I	L	S	K	R	E	W	F	K	V	P	F	E	D	I	I	D	R	S	K	G	I	Y	N	F	G	N	G	Q	E	T	F	E	D	Q	E	I	M	Q	K	Y	W	V	D	N	A	S	Y	P	Y	K	S	H	D	Q	W	.	.	F	L
Template Known Secondary structure							G	G	G			.	.	.	.	.	.								S	T	T	T	T				G	G	G	T	T	T	G	G	G	T					S	T	T							T	T	S	S		B	S	S	G	G	G	T	T	S									.	.
Template Predicted Secondary structure												.	.	.	.	.	.																																																													.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.							.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	L	K	E	Q	G	K	V	P	A	V	A	N	D	Y	S	Q	Y	V	T	S	R	F
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		T	E	N	I	R	W	G	Y	L	P	A	S	T	.	D	T	K	A	I	V	D	K	V	N
Template Known Secondary structure							T	T	S	S		T	T		.										B
Template Predicted Secondary structure															.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions