Job Description Q47537 Confidence 83.87% Date Thu Jan 5 12:36:50 GMT 2012 Rank 147 Aligned Residues 170 % Identity 18% Template c1xt8B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative amino-acid transporter periplasmic solute-binding PDBTitle: crystal structure of cysteine-binding protein from campylobacter2 jejuni at 2.0 a resolution Resolution 2.00 Å

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		45	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		F	A	K	E	.	.	.	S	G	A	T	V	D	W	R	K	F	D	S	G	A	S	I	V	R	A	L	A	S	G	D	V	Q	I	G	N	L	G	S	S	P	L	A	V	A	A	S	Q	Q	V	P	I	E	V	F	L	L	A	S	K	L	G	N	S	E	A	L	V	V	K	K	T	I	S	K	P	E	D	L	I
Query Conservation						.	.	.
Alig confidence						.	.	.													.																																										.	.	.
Template Conservation																					.																																										.	.	.
Template Sequence		I	A	K	E	L	F	G	D	E	N	K	V	Q	F	V	L	V	E	A	.	A	N	R	V	E	F	L	K	S	N	K	V	D	I	I	L	A	N	F	T	Q	T	P	Q	R	A	E	Q	V	D	F	C	S	P	Y	M	K	V	A	L	G	.	.	.	V	A	V	P	K	D	S	N	I	T	S	V	E	D	L	K
Template Known Secondary structure								S		T	T									G	.	G	G							T	T	S		S				S	S		B							T	T														.	.	.					T	T					S	G	G	G	G	T
Template Predicted Secondary structure																					.																																										.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	R	I	A	V	P	F	I	S	T	T	H	Y	S	L	L	A	A	L	K	H	W	G	I	K	P	G	Q	V	E	I	V	N	L	Q	P	P	A	I	I	A	A	W	Q	R	G	D	I	D	G	A	Y	V	W	A	P	A	V	N	A	L	E	K	D	G	K	V	L	T	D	S	E	Q	V	G	Q	W	G	A
Query Conservation
Alig confidence																					.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		D	K	T	L	L	L	N	K	G	T	T	A	D	A	Y	F	T	Q	N	.	.	.	.	.	.	Y	P	N	I	K	T	L	K	Y	D	Q	N	T	E	T	F	A	A	L	M	D	K	R	G	D	A	L	S	H	D	N	T	L	L	F	A	W	V	K	D	H	P	D	F	K	M	G	I	K	E	L	G	N	K	D
Template Known Secondary structure		T	S						T	T	S										.	.	.	.	.	.		T	T	S						S	S										T	T	S	S	S																	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	L	D	V	W	V	V	R	K	D	F	A	E	K	H	P	E	V	V	K	A	F	A	K	S	A	I	D
Query Conservation
Alig confidence									.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.
Template Sequence		V	I	A	P	A	V	K	.	.	.	.	.	.	K	G	D	K	E	L	K	E	F	I	D	N	L	I	I	K
Template Known Secondary structure									.	.	.	.	.	.	T	T
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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