Job Description P0AEQ3 Confidence 97.29% Date Thu Jan 5 11:23:56 GMT 2012 Rank 51 Aligned Residues 188 % Identity 9% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	G	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	D	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D	F	S
Query Conservation
Alig confidence									.								.	.	.	.	.	.	.	.	.
Template Conservation									.								.	.	.	.	.	.	.	.	.
Template Sequence		K	S	V	K	I	G	Y	.	V	N	W	G	G	E	T	.	.	.	.	.	.	.	.	.	A	A	T	N	V	L	K	V	V	F	E	K	M	G	Y	N	A	E	I	F	S	V	T	T	S	I	M	Y	Q	Y	L	A	S	G	K	I	D	G	T	V	S	S	W	V	P	T	A	D	K	F	Y	Y	E	K	L	K
Template Known Secondary structure									.								.	.	.	.	.	.	.	.	.													T	T																			T	T	S	S	S								T	T	T	T								G
Template Predicted Secondary structure									.								.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.		.	.	.	.	.	.	.										40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150						.	.	.	.	.	.	.	.	.	160	.					.
Predicted Secondary structure												.	.	.	.	.	.																.	.	.	.	.	.	.																						.	.	.	.	.												.	.	.	.
Query SS confidence												.	.	.	.	.	.																.	.	.	.	.	.	.																						.	.	.	.	.												.	.	.	.
Query Sequence		D	G	Y	Y	K	S	G	L	L	V	.	.	.	.	.	.	M	V	K	A	N	N	N	D	V	K	S	V	K	D	L	.	.	.	.	.	.	.	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	I	.	.	.	.	.	K	T	K	D	L	R	Q	F	P	N	I	.	.	.	.	D
Query Conservation												.	.	.	.	.	.																.	.	.	.	.	.	.																						.	.	.	.	.												.	.	.	.
Alig confidence												.	.	.	.	.	.																.	.	.	.	.	.	.																						.	.	.	.	.												.	.	.	.
Template Conservation
Template Sequence		T	K	F	V	D	L	G	A	N	Y	E	G	T	I	Q	G	F	V	V	P	S	Y	V	P	I	S	S	I	S	E	L	K	G	K	G	D	K	F	K	N	K	M	I	G	I	D	A	G	A	G	T	Q	I	V	T	E	Q	A	L	N	Y	Y	G	L	S	K	E	Y	E	L	V	P	S	S	E	S	V	M	L	A
Template Known Secondary structure		G	G																			T	T	S				B	G	G	G	G	T	T		G	G	G	G	T	T						S	T	T														T	T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence		N	A	Y	M	E	L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	I	A	F	P	K	G	.	.	.	.	.	S	D	E	L	R	D	K	V	N	G
Query Conservation																																																						.	.	.	.	.
Alig confidence																							.	.																														.	.	.	.	.
Template Conservation																							.	.
Template Sequence		S	L	D	S	S	I	K	R	N	E	W	I	L	V	P	L	W	K	P	H	W	.	.	A	F	S	R	Y	D	I	K	F	L	D	D	P	D	L	I	M	G	G	I	E	S	V	H	T	L	V	R	L	G	L	E	N	D	D	F	D	A	Y	Y	V	F	D	H
Template Known Secondary structure									T	T										S		T	.	.					S						B		T	T		T	T		S	S									T	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions