Job Description P0AEQ3 Confidence 100.00% Date Thu Jan 5 11:23:56 GMT 2012 Rank 16 Aligned Residues 223 % Identity 24% Template c3r39A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative periplasmic binding protein; PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica Resolution 2.14 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		S	H	A	A	D	K	K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	.	G	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	D	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		S	I	V	E	G	R	T	L	N	V	A	V	S	P	A	S	P	P	M	L	F	K	S	A	D	G	K	L	Q	G	I	D	L	E	L	F	S	S	Y	C	Q	S	R	H	C	K	L	N	I	T	E	Y	A	W	D	G	M	L	G	A	V	A	S	G	Q	A	D	V	A	F	S	G	I	S	I	T	D	K	R	K
Template Known Secondary structure				S	T	T												T	T	T					S	S	S				S														T																				T	S		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.
Query Sequence		K	A	I	D	F	S	D	G	Y	Y	K	S	G	L	L	V	M	V	K	A	N	N	N	D	V	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	I	.	.	.	.	.	.	.	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T	N
Query Conservation																																																						.	.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	I	D	F	S	E	P	Y	Y	I	N	S	F	Y	L	V	S	M	A	N	H	K	I	T	L	N	N	L	N	E	L	N	K	Y	S	I	G	Y	P	R	G	M	A	Y	S	D	L	I	K	N	D	L	E	P	K	G	Y	Y	S	L	S	K	V	K	L	Y	P	T	Y	N	E	T	M	A	D	L	K	N	G
Template Known Secondary structure		T	T							S											T	T	S					S	S	G	G	G	G	G	G	S						T	T	S	T									T	G	G	G	T	S			G	G	G					S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	I	A	F	P	K	G	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	R	E	N	G	T	Y	N	E	I	Y	K	K	W	F	G	T
Query Conservation
Alig confidence																							.																								.													.
Template Conservation																							.																								.													.
Template Sequence		N	L	D	L	A	F	I	E	E	P	V	Y	F	T	F	K	N	K	K	K	M	.	P	I	E	S	R	Y	V	F	K	N	V	D	Q	L	G	I	A	F	K	K	G	S	P	.	V	R	D	D	F	N	L	W	L	K	E	Q	.	G	P	Q	K	I	S	G	I	V	D	S	W	M	K	A
Template Known Secondary structure		S		S															T	S			.																				T	T			.													.														T
Template Predicted Secondary structure																							.																								.													.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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