Job Description P0AEQ3 Confidence 97.58% Date Thu Jan 5 11:23:56 GMT 2012 Rank 48 Aligned Residues 199 % Identity 14% Template c3qslA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50 Resolution 2.00 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		A	D	K	K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	G	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	.	D	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I
Query Conservation																																																		.
Alig confidence											.	.										.	.	.	.	.																								.
Template Conservation											.	.										.	.	.	.	.
Template Sequence		E	K	A	K	V	Q	I	A	V	.	.	G	G	K	P	L	I	Y	Y	L	.	.	.	.	.	P	L	T	I	A	E	V	K	G	F	F	K	D	E	G	L	D	V	S	I	A	D	F	A	G	G	S	K	A	L	Q	A	V	V	G	G	S	A	D	V	V	S	G	A	F	E	H	T	L	S	L	Q	A	K	G
Template Known Secondary structure		S		S							.	.	S		T	T	S	G	G	G		.	.	.	.	.								T	T					T	T									S	S										T	T	S		S						T									T	T
Template Predicted Secondary structure											.	.										.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.						.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																			.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																																			.	.	.	.	.	.	.	.
Query Sequence		D	F	S	D	G	Y	Y	K	S	G	L	L	.	.	.	.	.	V	M	V	K	A	N	N	N	D	V	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	.	.	.	.	.	.	.	.	A	N	I	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L
Query Conservation														.	.	.	.	.																																			.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	Y	R	A	F	A	L	Q	G	R	A	P	X	I	G	V	G	V	S	K	K	N	L	P	G	Y	K	G	P	A	D	L	K	G	R	K	I	G	V	T	A	P	G	S	S	T	N	X	V	V	N	F	F	L	A	K	H	G	L	K	A	S	D	V	S	F	I	G	V	G	A	G	A	G	A	V	T	A	L
Template Known Secondary structure										S	B	S	S									T	T	T		T	T			S	G	G	G	G	T	T						S	S	T	T	S													T	T			G	G	G	S							S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.										.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.										.	.	.	.
Query Sequence		G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	.	.	.	.	.	.	.	.	Q	Y	G	I	A	F	P	K	G	.	.	.	.	S	D	E	L	R	D	K	V	N	G	A	L	K	T
Query Conservation																																							.	.	.	.	.	.	.	.										.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		R	S	G	Q	I	D	A	I	S	N	T	D	P	V	V	S	X	L	E	T	S	G	D	I	Q	I	I	V	D	T	R	T	L	K	D	T	K	E	I	F	G	G	N	X	P	A	G	C	L	Y	A	P	Q	A	F	V	D	A	N	P	N	T	A	Q	A	L	T	N	A	I	V	R
Template Known Secondary structure				T	S		S						T	T								T	T									S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions