Job Description P0AEQ3 Confidence 98.15% Date Thu Jan 5 11:23:56 GMT 2012 Rank 39 Aligned Residues 213 % Identity 15% Template c3l6gA_ PDB info PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation Resolution 1.90 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	G	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	D	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D	F
Query Conservation
Alig confidence										.								.	.	.	.	.	.	.	.	.
Template Conservation										.								.	.	.	.	.	.	.	.	.
Template Sequence		D	K	K	V	D	L	V	Y	.	M	N	W	D	S	E	V	.	.	.	.	.	.	.	.	.	A	S	I	N	V	L	T	Q	A	M	K	E	H	G	F	D	V	K	T	T	A	L	D	N	A	V	A	W	Q	T	V	A	N	G	Q	A	D	G	M	V	S	A	W	L	P	N	T	H	K	T	Q	W	Q	K	Y
Template Known Secondary structure										.		S						.	.	.	.	.	.	.	.	.													T	T																			T	T	S	S	S								T	T	T	T
Template Predicted Secondary structure										.								.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.		.	.	330	.	.	.	.										.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.											.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.
Predicted Secondary structure													.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence													.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		S	D	G	Y	Y	K	S	G	L	L	V	.	.	.	.	.	.	M	V	K	A	N	N	N	D	V	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	.	.	.	.	.	.	.	.	.	.	K	A	N	I	K	T	K	D	L	R	Q	F	P	N	I	.	.	.	D	N	A
Query Conservation													.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence													.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation
Template Sequence		G	K	S	V	D	L	L	G	P	N	L	K	G	A	K	V	G	F	V	V	P	S	Y	M	N	V	N	S	I	E	D	L	T	N	Q	A	N	K	T	I	T	G	I	E	P	G	A	G	V	M	A	A	S	E	K	T	L	N	S	Y	D	N	L	K	D	W	K	L	V	P	S	S	S	G	A	M	T	V	A	L
Template Known Secondary structure		G	G	G																			T	T	S				B	G	G	G		S	S	G	G	G	G							T	T												T	T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.					.	.	.	.	.	220	.	.											.	.	.	.	.	.	.
Predicted Secondary structure																																														.							.	.	.	.									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.							.	.	.	.									.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	M	E	L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	.	I	A	F	P	K	G	.	.	.	.	S	D	E	L	R	D	K	V	.	.	.	.	.	.	.	.	.	.	N	G	A	L	K	T	L
Query Conservation																																														.							.	.	.	.									.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																								.							.	.	.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.
Template Sequence		G	E	A	I	K	Q	H	K	D	I	V	I	T	G	W	S	P	H	W	.	.	M	F	N	K	Y	D	L	K	Y	L	A	D	P	K	G	T	M	G	T	S	E	N	I	N	T	I	V	R	K	G	L	K	K	E	N	P	E	A	Y	K	V	L	D	K	F	N	W	T	T	K	D	M	E	A	V	M	L	D	I
Template Known Secondary structure							T	T										S		T	.	.					S						B		T	T		T	T												T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.			.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	N	G	T	Y	N	E	I	Y	K	K	W	F	G	T	E	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	G	K	T	P	E	E	A	A	K	N	W	I	K	D	H	Q	K
Template Known Secondary structure			T	T														T
Template Predicted Secondary structure
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions