Job Description P0AEQ3 Confidence 44.86% Date Thu Jan 5 11:23:56 GMT 2012 Rank 105 Aligned Residues 191 % Identity 11% Template c3kn3C_ PDB info PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes Resolution 2.41 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		G	F	D	V	D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	D	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D	F	S	D	G	Y	Y	K	S	G	L	L	V	M	V	K	A	N	N	N	D	V	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																																														.	.	.	.
Template Conservation
Template Sequence		G	L	L	D	V	L	A	P	A	Y	K	K	D	T	G	V	D	L	K	W	V	A	V	G	T	G	N	A	L	K	L	G	E	N	C	D	V	D	V	V	F	V	H	A	P	K	V	E	L	E	Y	V	E	K	G	F	G	I	D	R	T	P	V	X	Y	N	D	F	V	I	I	G	N	P	S	F	K	Q	K	F
Template Known Secondary structure																																			T	T			S					S											T	T	S																		G	G	G	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
										124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.												.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	.	.	.	.	.	.	.	.	.	.	.	N	I	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L
Query Conservation		.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	X	S	V	A	E	A	F	K	L	I	E	K	E	Q	V	K	F	V	S	R	G	D	K	S	G	T	H	S	K	E	R	E	V	W	K	E	A	L	G	K	I	P	E	K	E	S	W	Y	I	E	A	G	Q	G	X	L	A	T	I	N	I	A	E	E	Q	K	G	L	T	L	T	D	R	G	T	F	I	K
Template Known Secondary structure		T	T													T	T								S	S	S															S	S			T	T		T	T						S												T	T		B
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		185	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure									.	.																							.	.	.	.	.	.
Query SS confidence									.	.																							.	.	.	.	.	.
Query Sequence		Y	F	I	K	T	A	G	.	.	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	I	A	F	P	K	.	.	.	.	.	.	G	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	R	E	N	G	T	Y	N	E	I	Y	K	K	W
Query Conservation									.	.																							.	.	.	.	.	.
Alig confidence									.	.																							.	.	.	.	.	.														.	.	.	.
Template Conservation																																																				.	.	.	.
Template Sequence		Y	E	S	N	H	K	G	K	P	P	X	V	I	V	L	E	G	D	N	T	L	K	N	F	Y	S	I	X	A	V	N	P	K	R	C	E	K	A	D	Y	K	G	A	K	Q	F	I	D	W	I	.	.	.	.	V	S	E	K	X	Q	A	E	I	A	N	F
Template Known Secondary structure					T	S		S	S		S									G	G	G											T	T	T		T	T	S													.	.	.	.	T	S
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions