Job Description P0AEQ3 Confidence 97.62% Date Thu Jan 5 11:23:56 GMT 2012 Rank 47 Aligned Residues 208 % Identity 15% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.
Predicted Secondary structure																																																			.																								.	.
Query SS confidence																																																			.																								.	.
Query Sequence		H	A	A	D	K	K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	G	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	.	M	D	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	.	.	I	T	D	E	R
Query Conservation																																																			.																								.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																											.																								.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		H	M	D	T	S	K	V	K	V	G	V	M	A	.	.	.	.	.	.	.	.	.	.	G	A	E	A	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	T	F	T	D	Y	V	T	P	N	A	A	L	D	D	G	S	I	D	M	N	A	F	Q	H	K	P	Y	L	D	R	Q	V
Template Known Secondary structure			S											T	.	.	.	.	.	.	.	.	.	.	T																											S		T	T	S								T	S		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.											40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	A	I	D	F	S	D	G	Y	Y	K	S	G	L	L	V	M	V	K	A	N	N	N	D	V	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	I	K	T	K	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	R	D	Y	K	L	T	I	A	G	N	T	F	V	Y	P	I	A	G	Y	S	K	Q	V	K	S	V	A	A	L	A	D	G	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	E	Q	Q	G	L	I	K	L	R	P	E	V	G	L	L	A	T	V	R	D	I	V	E	N	P	K	N
Template Known Secondary structure																								S	S		S		S	T	T			T	T								S														T	T	S					T	T			S	S			G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	I	A	F	P	K	G	.	.	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	R	E	N	G
Query Conservation																																																													.	.
Alig confidence																													.																																.	.													.	.	.	.
Template Conservation																													.																																														.	.	.	.
Template Sequence		I	T	I	M	E	L	D	A	A	Q	L	P	R	S	L	D	D	V	A	L	S	I	I	N	T	T	Y	.	A	S	S	I	N	L	T	P	E	K	D	G	V	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	A	R	Q	D	N	V	Q	N	E	N	V	Q	N	F	V	K	A	Y	.	.	.	.	Q	T	E
Template Known Secondary structure									G	G	G					T	T	T	S	S									.		G	G	G	T								S					S	S	S	S									T	T	T	T	T	S											.	.	.	.	T	S
Template Predicted Secondary structure																													.																																														.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.
		234	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	N	E	I	Y	K	K	W	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	Y	T	A	A	K	E	I	F
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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