Job Description P0AEQ3 Confidence 100.00% Date Thu Jan 5 11:23:56 GMT 2012 Rank 8 Aligned Residues 214 % Identity 27% Template c3i6vA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein; PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine Resolution 2.00 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	.	G	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	D	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D	F	S
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		T	V	R	M	G	T	E	G	A	Y	P	P	Y	N	F	I	N	D	A	G	E	V	D	G	F	E	R	E	L	G	D	E	L	C	K	R	A	G	L	T	C	E	W	V	K	N	D	W	D	S	I	I	P	N	L	V	S	G	N	Y	D	T	I	I	A	G	M	S	I	T	D	E	R	D	E	V	I	D	F	T
Template Known Secondary structure									S			T	T	T					T	T	S				S														T										G	G	G							T	T	S		S				S	S		B							T	T	S
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	Y	Y	K	S	G	L	L	V	M	V	K	A	N	N	N	D	V	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	I	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L
Query Conservation
Alig confidence																		.	.	.	.	.	.																								.	.
Template Conservation																		.	.	.	.	.	.																								.	.
Template Sequence		Q	N	Y	I	P	P	T	A	S	S	Y	V	A	T	S	D	.	.	.	.	.	.	G	A	D	L	S	G	I	V	A	A	Q	T	A	T	I	Q	A	G	Y	I	A	E	S	.	.	G	A	T	L	V	E	F	A	T	P	E	E	T	I	A	A	V	R	N	G	E	A	D	A	V	F	A	D	R	D	Y	L	V
Template Known Secondary structure															S	S	T	.	.	.	.	.	.	T			T	T	S						T	T	S									S	.	.	S	S						S	S										T	T	S	S	S
Template Predicted Secondary structure																		.	.	.	.	.	.																								.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	I	A	F	P	K	G	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	R	E	N	G	T	Y	N	E	I	Y	K	K	W	F	G	T	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	I	V	A	E	S	G	G	E	L	M	F	V	G	D	D	V	P	L	G	G	G	V	G	M	G	L	R	E	S	D	G	E	L	R	G	K	F	D	A	A	I	T	S	M	K	E	D	G	T	L	N	T	M	I	K	K	W	F	G	E	D	A
Template Known Secondary structure							T	T	T	S	S										S	S								T	T																		T	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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