Job Description P0AEQ3 Confidence 97.57% Date Thu Jan 5 11:23:56 GMT 2012 Rank 49 Aligned Residues 209 % Identity 10% Template c3hn0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		D	K	K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	G	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	D	.	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D
Query Conservation																																																		.
Alig confidence										.								.	.	.	.	.	.	.	.	.																								.																						.	.	.	.	.	.
Template Conservation										.								.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template Sequence		D	T	V	I	K	V	S	V	.	L	R	G	P	S	V	I	.	.	.	.	.	.	.	.	.	A	F	A	D	W	L	E	N	P	P	I	I	D	N	K	K	V	Q	V	K	V	V	D	S	P	D	L	A	Q	A	L	L	I	K	Q	E	T	D	I	A	V	L	P	X	I	.	.	.	.	.	.	N	A	A	N
Template Known Secondary structure										.		S	S	T				.	.	.	.	.	.	.	.	.		T						S					T	T									S											T	T			S								.	.	.	.	.	.
Template Predicted Secondary structure										.								.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30		.	.	.	.	.	.	.										.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		F	S	D	G	Y	Y	K	S	G	L	L	V	M	V	K	A	N	N	N	D	V	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	.	.	.	.	.	.	A	N	I	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T	N	R	A	D	A	V
Query Conservation																																															.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	N	K	G	I	K	I	K	L	A	G	C	P	I	W	G	T	L	Y	L	V	E	K	T	P	L	K	E	P	A	L	Y	V	F	G	N	G	T	T	P	D	I	L	T	R	Y	Y	L	G	R	Q	R	L	D	Y	P	L	N	Y	A	F	N	T	A	G	E	I	T	Q	G	I	L	A	G	K	V	N	R	A
Template Known Secondary structure					T	T		S																		S	S			S						S	S	T	T	S														T								S			S											T	S		S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.											.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.		.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.																								.										.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.																								.										.
Query Sequence		L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	I	A	F	.	.	.	.	.	.	.	.	.	.	P	K	G	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	R	E	N	G	T	.	Y	N	E	I	Y	K	K	W	F	.	G
Query Conservation																																					.	.	.	.	.	.	.	.	.	.																								.										.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.																								.										.
Template Conservation
Template Sequence		V	L	G	E	P	F	L	S	I	A	L	R	K	D	S	S	L	R	I	T	A	D	L	N	H	L	T	D	N	D	T	L	G	F	A	Q	T	A	V	V	Y	T	P	T	X	E	K	Y	R	I	A	F	E	D	A	L	R	A	S	C	Q	K	A	V	R	Y	P	K	E	T	I	H	S	L	E	E	H	G	I	F
Template Known Secondary structure					T	T										T	T										S	S	T	T		S	S											G	G	G	G	G	G																													T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		245	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	G	A
Template Known Secondary structure			T	T	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions