Job Description P0AEQ3 Confidence 98.11% Date Thu Jan 5 11:23:56 GMT 2012 Rank 40 Aligned Residues 217 % Identity 12% Template c3e4rA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes Resolution 2.01 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.											.
Query SS confidence																																											.	.											.
Query Sequence		H	A	A	D	K	K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	G	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	.	.	K	L	D	Y	E	L	K	P	M	D	.	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R
Query Conservation																																											.	.											.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.													.	.											.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	E	P	A	Q	L	R	I	G	Y	Q	K	A	V	S	S	L	.	.	.	.	.	.	.	.	.	.	.	V	L	A	K	Q	H	R	L	L	E	Q	R	F	P	R	T	K	I	T	W	V	E	F	P	A	G	P	Q	L	L	E	A	L	N	V	G	S	I	D	L	G	G	A	G	D	I	P	P	L	F	A
Template Known Secondary structure						S								T	T					.	.	.	.	.	.	.	.	.	.	.						T	T							T	T	S								S	S										T	T	S		S						S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.												.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		98	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.																																										.	.	.	.	.	.
Query SS confidence													.	.	.	.																																										.	.	.	.	.	.
Query Sequence		K	K	A	I	D	F	S	D	G	Y	Y	.	.	.	.	K	S	G	L	L	V	M	V	K	A	N	N	N	D	V	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	.	.	.	.	.	.	I	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E
Query Conservation													.	.	.	.																																										.	.	.	.	.	.
Alig confidence													.	.	.	.																																										.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	A	G	A	D	L	L	Y	V	G	W	V	P	P	T	P	K	A	E	T	I	L	V	P	S	K	S	A	L	R	T	V	A	D	L	K	G	K	R	I	A	F	Q	K	G	S	S	A	H	N	L	L	L	R	V	L	A	K	S	G	L	S	M	R	D	I	T	P	L	Y	L	S	P	A	N	A	R	A	A
Template Known Secondary structure				T	T													G	G	G							T	T					S	G	G	G	G	T	T							T	T	S													T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.					.	.	.	.																.
Query SS confidence																																																.	.	.					.	.	.	.																.
Query Sequence		L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	I	A	F	P	K	.	.	.	G	S	D	E	.	.	.	.	L	R	D	K	V	N	G	A	L	K	T	L	R	E	N	.	G	T	Y	N	E	I	Y
Query Conservation																																																.	.	.					.	.	.	.																.
Alig confidence																																																.	.	.					.	.	.	.																.
Template Conservation
Template Sequence		F	A	A	G	Q	V	D	A	W	A	I	W	D	P	W	Y	S	A	L	T	L	D	G	S	A	R	L	L	A	N	G	E	G	L	G	L	T	G	G	F	F	L	S	S	R	R	Y	A	T	A	W	G	P	F	V	Q	Q	V	M	G	T	L	N	Q	A	D	G	L	L	E	R	D	R	A	G	S	I	K	T	L
Template Known Secondary structure				T	T			S						T	T								T	T	S							S	T	T	S																	T																T					T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	W	F	G	T	E	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	V	S	G	L	P	P	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions